Missing include #417
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| name: github-actions | |
| on: [push, pull_request] | |
| jobs: | |
| windows-2019-dynamicLink: | |
| runs-on: windows-2019 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: HDF5 install | |
| run: | | |
| Invoke-WebRequest https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.0/bin/hdf5-1.12.0-Std-win10_64-vs16.zip -OutFile ${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16.zip | |
| Expand-Archive ${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16.zip -DestinationPath ${{ runner.temp }} | |
| msiexec.exe /i "${{ runner.temp }}\hdf\HDF5-1.12.0-win64.msi" /qn INSTALL_ROOT=${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16 | |
| - name: Minizip DLL install | |
| run: | | |
| git clone https://github.com/F2I-Consulting/Minizip.git ${{ runner.temp }}/Minizip | |
| cd ${{ runner.temp }} | |
| mkdir minizip-build | |
| cd minizip-build | |
| cmake -G"Visual Studio 16 2019" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DZLIB_ROOT=${{ runner.temp }}/hdf5-1.12.0-Std-win10_64-vs16 -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/minizip-install ${{ runner.temp }}/Minizip | |
| cmake --build . --config Release -j2 | |
| cmake --build . --config Release --target INSTALL | |
| - name: Boost install | |
| run: | | |
| (New-Object System.Net.WebClient).DownloadFile("https://sourceforge.net/projects/boost/files/boost-binaries/1.78.0//boost_1_78_0-msvc-14.2-64.exe", "${{ runner.temp }}\boost.exe") | |
| Start-Process -Wait -FilePath "${{ runner.temp }}\boost.exe" "/SILENT","/SP-","/SUPPRESSMSGBOXES","/DIR=${{ runner.temp }}\boost-install" | |
| - name: CMake build and install | |
| run: | | |
| cd ${{ github.workspace }}/.. | |
| mkdir build | |
| cd build | |
| cmake -G"Visual Studio 16 2019" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DHDF5_ROOT=${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16 -DMINIZIP_ROOT=${{ runner.temp }}/minizip-install -DZLIB_ROOT=${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16 -DSZIP_LIBRARY_RELEASE=${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16/lib/szip.lib -DBoost_INCLUDE_DIR=${{ runner.temp }}\boost-install -DWITH_EXAMPLE=TRUE -DWITH_RESQML2_2=TRUE -DWITH_TEST=TRUE ${{ github.workspace }} | |
| cmake --build . --config Release -j2 | |
| cmake --build . --config Release --target INSTALL | |
| - name: Copy hdf5 dll | |
| run: | | |
| Copy-Item ${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16\bin\hdf5.dll -Destination ${{ github.workspace }}\..\build\Release | |
| Copy-Item ${{ runner.temp }}\hdf5-1.12.0-Std-win10_64-vs16\bin\zlib.dll -Destination ${{ github.workspace }}\..\build\Release | |
| - name: Run Unit tests | |
| run: | | |
| ${{ github.workspace }}\..\build\Release\unitTest | |
| - name: Run Cpp example | |
| run: | | |
| ${{ github.workspace }}\..\build\Release\example.exe | |
| windows-2019-staticLink-cs: | |
| runs-on: windows-2019 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: zlib install | |
| run: | | |
| Invoke-WebRequest https://zlib.net/current/zlib.tar.gz -OutFile ${{ runner.temp }}\zlib.tar.gz | |
| cd ${{ runner.temp }} | |
| tar -xzf ${{ runner.temp }}\zlib.tar.gz | |
| mkdir zlib-build | |
| cd zlib-build | |
| cmake -G"Visual Studio 16 2019" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/zlib-install ${{ runner.temp }}/zlib-1.3.1 | |
| cmake --build . --config Release -j2 | |
| cmake --build . --config Release --target INSTALL | |
| - name: Minizip static lib install | |
| run: | | |
| git clone https://github.com/F2I-Consulting/Minizip.git ${{ runner.temp }}/Minizip | |
| cd ${{ runner.temp }} | |
| mkdir minizip-build | |
| cd minizip-build | |
| cmake -G"Visual Studio 16 2019" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DBUILD_SHARED_LIBS=FALSE -DZLIB_ROOT=${{ runner.temp }}/zlib-install -DZLIB_USE_STATIC_LIBS=TRUE -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/minizip-install ${{ runner.temp }}/Minizip | |
| cmake --build . --config Release -j2 | |
| cmake --build . --config Release --target INSTALL | |
| - name: HDF5 install | |
| run: | | |
| Invoke-WebRequest https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.14/hdf5-1.14.3/src/hdf5-1.14.3.zip -OutFile ${{ runner.temp }}\hdf5-1.14.3.zip | |
| cd ${{ runner.temp }} | |
| Expand-Archive ${{ runner.temp }}\hdf5-1.14.3.zip -DestinationPath ${{ runner.temp }} | |
| mkdir hdf5-build | |
| cd hdf5-build | |
| cmake -G"Visual Studio 16 2019" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON -DZLIB_INCLUDE_DIR:PATH=${{ runner.temp }}/zlib-install/include -DZLIB_LIBRARY:PATH=${{ runner.temp }}/zlib-install/lib/zlibstatic.lib -DHDF5_BUILD_FORTRAN:BOOL=OFF -DHDF5_BUILD_JAVA:BOOL=OFF -DHDF5_ENABLE_PARALLEL:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_GENERATORS:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_UTILS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX=${{ runner.temp }}/hdf5-install ${{ runner.temp }}/hdf5-1.14.3 | |
| cmake --build . --config Release -j2 | |
| cmake --build . --config Release --target INSTALL | |
| - name: Boost install | |
| run: | | |
| (New-Object System.Net.WebClient).DownloadFile("https://sourceforge.net/projects/boost/files/boost-binaries/1.84.0//boost_1_84_0-msvc-14.2-64.exe", "${{ runner.temp }}\boost.exe") | |
| Start-Process -Wait -FilePath "${{ runner.temp }}\boost.exe" "/SILENT","/SP-","/SUPPRESSMSGBOXES","/DIR=${{ runner.temp }}\boost-install" | |
| - name: Swig install | |
| run: | | |
| (New-Object System.Net.WebClient).DownloadFile("http://prdownloads.sourceforge.net/swig/swigwin-4.2.0.zip", "${{ runner.temp }}\swigwin-4.2.0.zip") | |
| 7z x ${{ runner.temp }}\swigwin-4.2.0.zip -o${{ runner.temp }} | |
| - name: CMake build and install | |
| run: | | |
| cd ${{ github.workspace }}/.. | |
| mkdir build | |
| cd build | |
| cmake -G"Visual Studio 16 2019" -A x64 -T host=x64 -Wno-dev -Wno-deprecated -DHDF5_ROOT=${{ runner.temp }}/hdf5-install -DHDF5_USE_STATIC_LIBRARIES=TRUE -DMINIZIP_ROOT=${{ runner.temp }}/minizip-install -DZLIB_ROOT=${{ runner.temp }}/zlib-install -DZLIB_USE_STATIC_LIBS=TRUE -DBoost_INCLUDE_DIR=${{ runner.temp }}/boost-install -DWITH_EXAMPLE=TRUE -DWITH_RESQML2_2=TRUE -DWITH_DOTNET_WRAPPING=TRUE -DSWIG_EXECUTABLE=${{ runner.temp }}/swigwin-4.2.0/swig.exe ${{ github.workspace }} | |
| cmake --build . --config Release -j2 | |
| cmake --build . --config Release --target INSTALL | |
| - name: Add msbuild to PATH | |
| uses: microsoft/[email protected] | |
| with: | |
| msbuild-architecture: x64 | |
| - name: Build the C# example | |
| run: msbuild ${{ github.workspace }}/cs/example/example.sln -t:rebuild /p:Configuration=Release /p:Platform="x64" | |
| - name: Run Cpp example | |
| run: | | |
| ${{ github.workspace }}\..\build\Release\example.exe | |
| - name: Copy all dlls for C# | |
| run: | | |
| Copy-Item ${{ github.workspace }}\..\build\Release\*.dll -Destination ${{ github.workspace }}\cs\example\bin\x64\Release | |
| - name: Run C# example | |
| run: | | |
| ${{ github.workspace }}\cs\example\bin\x64\Release\example.exe | |
| ubuntu-20-java8: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false # 'false' means Don't stop matrix workflows even if some matrix failed. | |
| matrix: | |
| include: [ | |
| { xcc_name: 'gcc 9', xcc_pkg: gcc-9, cc: gcc-9, cxx: g++-9 }, | |
| { xcc_name: 'gcc 10', xcc_pkg: gcc-10, cc: gcc-10, cxx: g++-10 }, | |
| { xcc_name: 'clang 9', xcc_pkg: clang-9, cc: clang-9, cxx: clang++-9 }, | |
| { xcc_name: 'clang 10', xcc_pkg: clang-10, cc: clang-10, cxx: clang++-10 }, | |
| { xcc_name: 'clang 11', xcc_pkg: clang-11, cc: clang-11, cxx: clang++-11 }, | |
| # { xcc_name: 'clang 12', xcc_pkg: clang-12, cc: clang, cxx: clang++ }, | |
| ] | |
| env: | |
| XCC: $${{ matrix.xcc_name }} # Set environment variables | |
| CC: ${{ matrix.cc }} | |
| CXX: ${{ matrix.cxx }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' # See 'Supported distributions' for available options | |
| java-version: '8' | |
| - name: APT install | |
| run: | | |
| sudo apt update | |
| sudo apt install -y ${{ matrix.xcc_pkg }} libminizip-dev libboost-all-dev | |
| # Build HDF5 instead of downloading the package because the package is not built with -fPIC causing relocation issue. | |
| - name: HDF5 build and install | |
| run: | | |
| cd ${{ runner.temp }} | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.gz | |
| tar -xzf hdf5-1.12.2.tar.gz | |
| cd hdf5-1.12.2 | |
| mkdir build | |
| cd build | |
| cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE:STRING=Release -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON -DCMAKE_INSTALL_PREFIX:STRING=${{ runner.temp }}/install-hdf5-1.12.2 .. | |
| cmake --build . --config Release | |
| make -j4 | |
| make install | |
| - name: CMake build and install | |
| run: | | |
| cd .. | |
| mkdir build | |
| cd build | |
| cmake -DHDF5_ROOT=${{ runner.temp }}/install-hdf5-1.12.2 -DHDF5_USE_STATIC_LIBRARIES=TRUE -DCMAKE_BUILD_TYPE=Release -DWITH_JAVA_WRAPPING=TRUE ${{ github.workspace }} -D CMAKE_C_COMPILER=${{ matrix.cc }} -D CMAKE_CXX_COMPILER=${{ matrix.cxx }} | |
| cmake --build . -j2 | |
| cmake --install . | |
| - name: Run java example | |
| run: | | |
| cd ${{ github.workspace }}/java/src | |
| javac -cp `find ${{ github.workspace }}/../build/install -name fesapiJava*.jar` com/f2i_consulting/example/FesapiJavaExample.java | |
| java -Djava.library.path=${{ github.workspace }}/../build/install/lib -cp `find ${{ github.workspace }}/../build/install -name fesapiJava*.jar`:. com.f2i_consulting.example.FesapiJavaExample | |
| ubuntu-20-python3: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: APT install | |
| run: | | |
| sudo apt update | |
| sudo apt install -y libminizip-dev libboost-all-dev | |
| # Build HDF5 instead of downloading the package because the package is not built with -fPIC causing relocation issue. | |
| - name: HDF5 build and install | |
| run: | | |
| cd ${{ runner.temp }} | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.14/hdf5-1.14.0/src/hdf5-1.14.0.tar.gz | |
| tar -xzf hdf5-1.14.0.tar.gz | |
| cd hdf5-1.14.0 | |
| mkdir build | |
| cd build | |
| cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE:STRING=Release -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_TESTING:BOOL=OFF -DHDF5_BUILD_TOOLS:BOOL=OFF -DHDF5_BUILD_EXAMPLES:BOOL=OFF -DHDF5_BUILD_CPP_LIB:BOOL=OFF -DHDF5_BUILD_HL_LIB:BOOL=OFF -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=ON -DCMAKE_INSTALL_PREFIX:STRING=${{ runner.temp }}/install-hdf5-1.14.0 .. | |
| cmake --build . --config Release | |
| make -j4 | |
| make install | |
| - name: CMake build and install | |
| run: | | |
| cd .. | |
| mkdir build | |
| cd build | |
| cmake -DHDF5_ROOT=${{ runner.temp }}/install-hdf5-1.14.0 -DHDF5_USE_STATIC_LIBRARIES=TRUE -DCMAKE_BUILD_TYPE=Release -DWITH_PYTHON_WRAPPING=TRUE ${{ github.workspace }} | |
| cmake --build . -j2 | |
| cmake --install . | |
| - name: Run Python example | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${{ github.workspace }}/../build/install/lib | |
| pip3 install ${{ github.workspace }}/python/dist/*.whl | |
| python3 ${{ github.workspace }}/python/example/example.py | |
| ubuntu-20-mpi: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: APT install | |
| run: | | |
| sudo apt update | |
| sudo apt install -y libhdf5-mpi-dev libminizip-dev libboost-all-dev | |
| - name: Setup MPI | |
| uses: mpi4py/setup-mpi@v1 | |
| - name: CMake build and install | |
| run: | | |
| cd ${{ runner.temp }} | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_COMPILER=mpic++ -DCMAKE_C_COMPILER=mpicc -DHDF5_PREFER_PARALLEL:BOOL=TRUE -DWITH_EXAMPLE:BOOL=TRUE ${{ github.workspace }} | |
| cmake --build . -j2 | |
| cmake --install . | |
| - name: Run example | |
| run: mpiexec -n 2 ${{ runner.temp }}/build/install/example | |
| ubuntu-20-valgrind-unitTest: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: APT install | |
| run: | | |
| sudo apt update | |
| sudo apt install -y libhdf5-dev libminizip-dev libboost-all-dev valgrind | |
| - name: CMake build and install | |
| run: | | |
| cd .. | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_BUILD_TYPE=Debug -DWITH_EXAMPLE=TRUE -DWITH_RESQML2_2=TRUE -DWITH_TEST=TRUE ${{ github.workspace }} | |
| cmake --build . -j2 | |
| cmake --install . | |
| - name: Run Valgrind on example | |
| run: | | |
| valgrind --leak-check=full --track-origins=yes --show-leak-kinds=all ${{ github.workspace }}/../build/example/exampled | |
| - name: Run Unit tests | |
| run: | | |
| ${{ github.workspace }}/../build/test/unitTest | |
| webassembly: | |
| if: false | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: mymindstorm/setup-emsdk@v11 | |
| - uses: actions/checkout@v4 | |
| - name: Verify | |
| run: emcc -v | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "WASM_INSTALL_DIR=${{ github.workspace }}/install" >> $GITHUB_ENV | |
| echo "WASM_LIB_DIR=${{ github.workspace }}/install/lib" >> $GITHUB_ENV | |
| echo "WASM_INCLUDE_DIR=${{ github.workspace }}/install/include" >> $GITHUB_ENV | |
| - name: HDF5 install | |
| env: | |
| HDF5_DOWNLOAD_URL: https://github.com/HDFGroup/hdf5/archive/refs/tags/hdf5-1_12_1.tar.gz | |
| run: | | |
| wget ${{ env.HDF5_DOWNLOAD_URL }} -O hdf5_src.tgz | |
| tar -xvzf hdf5_src.tgz | |
| mkdir -p hdf5_build | |
| cd hdf5_build | |
| LDFLAGS="-s NODERAWFS=1 -s USE_ZLIB=1" emcmake cmake ../hdf5-hdf5-1_12_1 \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_INSTALL_PREFIX=${{ env.WASM_INSTALL_DIR }} \ | |
| -DH5_HAVE_GETPWUID=0 \ | |
| -DH5_HAVE_SIGNAL=0 \ | |
| -DBUILD_SHARED_LIBS=0 \ | |
| -DBUILD_STATIC_LIBS=1 \ | |
| -DBUILD_TESTING=0 \ | |
| -DHDF5_BUILD_EXAMPLES=0 \ | |
| -DHDF5_BUILD_TOOLS=0 \ | |
| -DHDF5_ENABLE_Z_LIB_SUPPORT=1 | |
| emmake make -j8 install | |
| - name: Minizip install | |
| run: | | |
| git clone https://github.com/F2I-Consulting/Minizip.git | |
| mkdir -p minizip_build | |
| cd minizip_build | |
| LDFLAGS="-s USE_ZLIB=1" emcmake cmake ../Minizip \ | |
| -DCMAKE_INSTALL_PREFIX=${{ env.WASM_INSTALL_DIR }} | |
| emmake make -j8 install | |
| - name: CMake build | |
| env: | |
| FESAPI_BUILD_DIR: fesapi_build | |
| run: | | |
| cd ${{ github.workspace }} | |
| # see https://sourceforge.net/p/gsoap2/bugs/1301/ | |
| #wget https://gist.github.com/untereiner/3af2e52fbd135235457d2a707d5480d4/raw/7f7e0706b3421593c4c617b9703e5a90e30bfa51/gsoap_wasm.patch | |
| #git apply gsoap_wasm.patch | |
| mkdir -p fesapi_build | |
| cd fesapi_build | |
| LDFLAGS="-s USE_ZLIB=1 -s USE_BOOST_HEADERS=1" emcmake cmake ../ \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_INSTALL_PREFIX=${{ env.WASM_INSTALL_DIR }} \ | |
| -DWITH_LOCAL_HDF5=ON \ | |
| -DHDF5_INCLUDE_DIRS=${{ env.WASM_INCLUDE_DIR }} \ | |
| -DHDF5_LIBRARIES=${{ env.WASM_LIB_DIR }}/libhdf5.a \ | |
| -DMINIZIP_INCLUDE_DIR=${{ env.WASM_INCLUDE_DIR }} \ | |
| -DMINIZIP_LIBRARY_RELEASE=${{ env.WASM_LIB_DIR }}/libminizip.a \ | |
| -DWITH_EXAMPLE=0 \ | |
| -DWITH_RESQML2_2=1 \ | |
| -DWITH_TEST=0 \ | |
| -DWITH_WASM_WRAPPING=1 | |
| emmake make -j8 fesapi-wasm | |
| emmake make -j8 fesapi-wasm-node | |
| - name: 'Upload Artifact' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: fesapi-mjs | |
| path: | | |
| ${{ github.workspace }}/webassembly/dist/esm/fesapi.mjs | |
| ${{ github.workspace }}/webassembly/dist/esm/fesapi.wasm | |
| # Setup .npmrc file to publish to npm | |
| #- name: 'Setup node' | |
| # uses: actions/setup-node@v3 | |
| # with: | |
| # node-version: '16.x' | |
| # registry-url: 'https://registry.npmjs.org' | |
| # cache-dependency-path: ${{ github.workspace }}/webassembly/package-lock.json | |
| #- name: Configure NPM | |
| # working-directory: ${{ github.workspace }}/webassembly/ | |
| # run: | | |
| # echo "//npm.pkg.github.com/:_authToken=\${NODE_AUTH_TOKEN}" >> .npmrc | |
| # echo "always-auth: true" >> .npmrc | |
| # env: | |
| # NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }} | |
| #- run: npm ci | |
| # working-directory: ${{ github.workspace }}/webassembly/ | |
| #- run: npm publish --access public | |
| # working-directory: ${{ github.workspace }}/webassembly/ | |
| # env: | |
| # NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }} |