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Renamed a section to Biology and (Bio)-Chemistry Networks in agreement to cran-task-views/ctv#61 (comment)
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@@ -3,7 +3,7 @@ name: Network Analysis | |
topic: NetworkAnalysis | ||
maintainer: Fabio Ashtar Telarico (@FATelarico), Pavel N. Krivitsky (@krivit) | ||
email: [email protected] | ||
version: 2023-04-26 | ||
version: 2023-05-08 | ||
source: https://github.com/FATelarico/ctv-network | ||
--- | ||
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@@ -22,9 +22,7 @@ This page is articulated in sections listing the packages/functions to perform s | |
4. Finally, packages and functions for two advanced network-analytic tasks are presented: visualisation and clustering. In the latter case, the items listed are distinguished on the basis of their approach into three categories: | ||
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- community detection, | ||
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- blockmodeling, | ||
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- blockmodeling; | ||
- others. | ||
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Some packages could be placed under more heading because they can perform multiple tasks (e.g., clustering and visualisation). But for the sake of brevity, non-core packages are listed only once: in the section that described each package's main use case. | ||
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@@ -171,7 +169,7 @@ Being a flexible method, network analysis is used in a number of fields with spe | |
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- `r pkg("Diderot")` is geared towards the analysis of citation networks using modularity and heterocitation metrics based on Scopus data. | ||
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## (Bio)-Chemical networks | ||
## Biology and (Bio)-Chemistry Networks | ||
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- `r pkg("WGCNA")` focuses on the analysis of weighted correlation networks. It has functions for network construction, modularity computation, gene selection, topological analysis, generating data, plotting, and exports to third-party software. Notably, the underlying data mining approach has been used beyond biochemistry. There are several packages on Bioconductor that reverse-depend/extend these functionalities. | ||
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