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Renamed a section to Biology and (Bio)-Chemistry Networks in agreement to cran-task-views/ctv#61 (comment)
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FATelarico authored May 8, 2024
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Expand Up @@ -3,7 +3,7 @@ name: Network Analysis
topic: NetworkAnalysis
maintainer: Fabio Ashtar Telarico (@FATelarico), Pavel N. Krivitsky (@krivit)
email: [email protected]
version: 2023-04-26
version: 2023-05-08
source: https://github.com/FATelarico/ctv-network
---

Expand All @@ -22,9 +22,7 @@ This page is articulated in sections listing the packages/functions to perform s
4. Finally, packages and functions for two advanced network-analytic tasks are presented: visualisation and clustering. In the latter case, the items listed are distinguished on the basis of their approach into three categories:

- community detection,

- blockmodeling,

- blockmodeling;
- others.

Some packages could be placed under more heading because they can perform multiple tasks (e.g., clustering and visualisation). But for the sake of brevity, non-core packages are listed only once: in the section that described each package's main use case.
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- `r pkg("Diderot")` is geared towards the analysis of citation networks using modularity and heterocitation metrics based on Scopus data.

## (Bio)-Chemical networks
## Biology and (Bio)-Chemistry Networks

- `r pkg("WGCNA")` focuses on the analysis of weighted correlation networks. It has functions for network construction, modularity computation, gene selection, topological analysis, generating data, plotting, and exports to third-party software. Notably, the underlying data mining approach has been used beyond biochemistry. There are several packages on Bioconductor that reverse-depend/extend these functionalities.

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