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sync threads before and after MPI exchanges #566

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  1. ensuring thread synchronization if MPI exchanges are done within OMP parrallel regions
  2. clean up needless OMP barriers that are outside OMP Parallel regions

more stable, ran 3 months and a month (differerent exp) in levante without a crash.

validity of results need to be checked.

…arallel regions 2. clean up needless OMP barriers that are outside OMP Parallel regions
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