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Simplify conda weekly test #3467

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merged 20 commits into from
Oct 11, 2024
Merged

Simplify conda weekly test #3467

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c9200f6
Need to deal with mpich on macOS and Linux.
jhale Oct 11, 2024
7c9171f
Fix.
jhale Oct 11, 2024
d255df3
Temporarily enable on push.
jhale Oct 11, 2024
c1b8d1a
Fix.
jhale Oct 11, 2024
1331088
Try bash.
jhale Oct 11, 2024
1ab3343
Put conda on path.
jhale Oct 11, 2024
bf014d5
Fix.
jhale Oct 11, 2024
a0de86c
Try an action.
jhale Oct 11, 2024
c655b87
Simplify workflow.
jhale Oct 11, 2024
5a0b1e0
Fix.
jhale Oct 11, 2024
6111cdf
Try this.
jhale Oct 11, 2024
9f1fc87
Fix.
jhale Oct 11, 2024
edc1e22
Fix.
jhale Oct 11, 2024
a98fb31
Single quotes?
jhale Oct 11, 2024
1fdea09
Set special shell.
jhale Oct 11, 2024
6b8bec3
Switch to mpiexec (standard compliant)
jhale Oct 11, 2024
ce5c5c5
Just mpi4py
jhale Oct 11, 2024
9a44611
More info
jhale Oct 11, 2024
08b0815
Disable windows-2022 to get merged.
jhale Oct 11, 2024
e96b38c
Re-enable tests.
jhale Oct 11, 2024
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75 changes: 29 additions & 46 deletions .github/workflows/conda.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@ name: Conda install

on:
# Uncomment the below 'push' to trigger on push
# push:
# branches:
#push:
# branches:
# - "**"
schedule:
# '*' is a special character in YAML, so string must be quoted
Expand All @@ -15,52 +15,35 @@ jobs:
name: Install and test
strategy:
matrix:
# NOTE: Re-enable windows-2022 after iimpi libfabric.dll issue fixed.
os: [ubuntu-latest, macos-13, macos-14]
python-version: ["3.9", "3.10", "3.11", "3.12"]
runs-on: ${{ matrix.os }}
timeout-minutes: 30
# This is necessary to ensure conda environment is activated in every step.
defaults:
run:
shell: bash -el {0}

steps:
- name: Install conda (macOS)
if: runner.os == 'macOS'
run: |
brew install anaconda
echo "/opt/homebrew/anaconda3/bin:/usr/local/anaconda3/bin" >> $GITHUB_PATH
- name: Update conda
run: |
conda update conda

- name: Install DOLFINx (py3-10)
run: |
conda create -n env3-10 -c conda-forge python=3.10 fenics-dolfinx mpich
conda env export -n env3-10
- name: Test (py3-10)
run: |
conda run -n env3-10 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"
conda run -n env3-10 mpirun -np 2 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"

- name: Install DOLFINx (py3-11)
run: |
conda create -n env3-11 -c conda-forge python=3.11 fenics-dolfinx mpich
conda env export -n env3-11
- name: Test (py3-11)
run: |
conda run -n env3-11 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"
conda run -n env3-11 mpirun -np 2 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"

- name: Install DOLFINx (py3-12)
run: |
conda create -n env3-12 -c conda-forge python=3.12 fenics-dolfinx mpich
conda env export -n env3-12
- name: Test (py3-12)
run: |
conda run -n env3-12 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"
conda run -n env3-12 mpirun -np 2 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"

- name: Install DOLFINx (py3-12, petsc-complex)
run: |
conda create -n env3-12-complex -c conda-forge python=3.12 fenics-dolfinx petsc=*=complex* mpich
conda env export -n env3-12-complex
- name: Test (py3-12-complex)
run: |
conda run -n env3-12-complex python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"
conda run -n env3-12-complex mpirun -np 2 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"
- uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}

- name: Install DOLFINx with MPICH (Unix-like)
if: ${{ runner.os == 'macOS' || runner.os == 'Linux' }}
run: |
conda install -c conda-forge fenics-dolfinx mpich
- name: Install DOLFINx (Windows)
if: ${{ runner.os == 'Windows' }}
run: |
conda install -c conda-forge fenics-dolfinx

- name: Test
run: |
conda info
conda list
mpiexec --version
mpiexec -v -np 1 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"
mpiexec -v -np 2 python -c "from mpi4py import MPI; import dolfinx; dolfinx.mesh.create_rectangle(comm=MPI.COMM_WORLD, points=((0, 0), (2, 1)), n=(32, 16))"
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