update build scripts

.github/workflows/ci.yml

@@ -2,8 +2,8 @@
 # https://github.com/FNNDSC/cookiecutter-chrisapp/wiki/Automatic-Builds
 #
 # - targeted platforms: x86_64, PowerPC64, ARM64
-# - master is built as fnndsc/pl-csv2json:latest
-# - tagged commits are built as fnndsc/pl-csv2json:<tag>
+# - master is built as fnndsc/pl-markimg:latest
+# - tagged commits are built as fnndsc/pl-markimg:<tag>
 # - tagged commits are also uploaded to chrisstore.co
 #
 # In order to use this workflow, see
@@ -21,8 +21,8 @@ on:
 
 jobs:
   test:
-    if: False
-    runs-on: ubuntu-20.04
+    if: false
+    runs-on: ubuntu-24.04
     steps:
       - uses: actions/checkout@v2
       - name: build
@@ -32,7 +32,7 @@ jobs:
 
   publish:
     if: github.event_name == 'push' || github.event_name == 'release'
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
 
     # we want to both push the build to DockerHub, but also
     # keep a local copy so that we can run
@@ -89,9 +89,9 @@ jobs:
         with:
           username: ${{ secrets.DOCKERHUB_USERNAME }}
           password: ${{ secrets.DOCKERHUB_PASSWORD }}
-          
+
       - name: Login to GitHub Container Registry
-        uses: docker/login-action@v1 
+        uses: docker/login-action@v1
         with:
           registry: ghcr.io
           username: ${{ github.repository_owner }}
@@ -120,11 +120,16 @@ jobs:
           docker pull localhost:5000/$dock_image
           docker tag localhost:5000/$dock_image $dock_image
           script=$(docker inspect --format '{{ (index .Config.Cmd 0) }}' $dock_image)
-          docker run --rm $dock_image $script --json > /tmp/description.json
-          jq <<< "$json"  # pretty print in log
+          docker run --rm $dock_image $script --json \
+            | jq '. += {"name":"pl-csv2json", "dock_image": "'$dock_image'", "public_repo": "'${{ github.server_url }}/${{ github.repository }}'" }' \
+            > /tmp/description.json
+          json="$(docker run --rm $dock_image $script --json)"
+          # Escape single quotes
+          json_escaped=$(echo "$json" | sed "s/'/\\'/g")
 
-          echo "::set-output name=json::$json"
-          echo "::set-output name=title::$(jq -r '.title' <<< "$json")"
+          jq <<< "$json"  # pretty print in log
+          echo "json=$json_escaped" >> $GITHUB_OUTPUT
+          echo "title=$(jq -r '.title' <<< "$json")" >> $GITHUB_OUTPUT
 
       - name: Update DockerHub description
         uses: peter-evans/dockerhub-description@v2
@@ -139,32 +144,10 @@ jobs:
       - name: Upload ChRIS Plugin
         id: upload
         if: github.ref_type == 'tag'
-        run: |
-          auth='${{ secrets.CHRISPROJECT_USERNAME }}:${{ secrets.CHRISPROJECT_PASSWORD }}'
-          chris_url="https://cube.chrisproject.org/api/v1/"
-          admin_url="$(curl -sSf -u "$auth" $chris_url -H 'Accept: application/json' | jq -r '.collection_links.admin')"
-          compute_names="NERC"
-          if [ "$admin_url" = "null" ]; then
-            echo "::error ::${{ secrets.CHRISPROJECT_USERNAME }} is not an admin for $chris_url"
-            exit 1
-          fi
-          
-          set +e
-          res="$(
-            curl -sS -u "$auth" "$admin_url" \
-              -H 'Accept: application/json' \
-              -F fname=@- \
-              -F compute_names=$compute_names \
-              < /tmp/description.json
-          )"
-          rc=$?
-          
-          if [ "$rc" != "0" ]; then
-            echo "Description >>>"
-            cat /tmp/description.json
-            echo "Response >>>"
-            echo "$res"
-          
-            echo "::error ::Failed to upload plugin to $admin_url"
-            exit "$rc"
-          fi
+        uses: FNNDSC/upload-chris-plugin@main
+        with:
+          description_file: /tmp/description.json
+          username: ${{ secrets.CHRISPROJECT_USERNAME }}
+          password: ${{ secrets.CHRISPROJECT_PASSWORD }}
+          chris_url: https://cube.chrisproject.org/api/v1/
+          compute_names: NERC

setup.py

@@ -6,7 +6,7 @@
 
 setup(
     name             = 'csv2json',
-    version          = '1.3.6',
+    version          = '1.3.7',
     description      = 'An app to convert CSV generated from pl-lld_inference to a JSON representation',
     long_description = readme,
     author           = 'FNNDSC',