Merge pull request #718 from FelixKrueger/hexamers

Add hexamer context analysis for coverage2cytosine
FelixKrueger · Dec 8, 2024 · aac9a03 · aac9a03
2 parents 30189df + 71148ce
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -25,6 +25,7 @@
 
 - set threshold reads to 1 (if it was 0) for `--gc_context` as intended and mentioned in the help text. Fixes [#621](https://github.com/FelixKrueger/Bismark/issues/621)
 
+- Expanded option `--ff` into `--ffs` to extract **f**our, **f**ive, and **s**ix nucleotide contexts to enable hexamer context analyses. More details here: [#717](https://github.com/FelixKrueger/Bismark/issues/717)
 
 Added scripts for merging coverage files (e.g. for when R1 and R2 had been run in single-end mode)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -25,6 +25,7 @@

		- set threshold reads to 1 (if it was 0) for `--gc_context` as intended and mentioned in the help text. Fixes [#621](https://github.com/FelixKrueger/Bismark/issues/621)

		- Expanded option `--ff` into `--ffs` to extract four, five, and six nucleotide contexts to enable hexamer context analyses. More details here: [#717](https://github.com/FelixKrueger/Bismark/issues/717)

		Added scripts for merging coverage files (e.g. for when R1 and R2 had been run in single-end mode)

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