update to fit Seqstat.py

README.md

@@ -18,30 +18,27 @@ if the error is raised, install is ok.
 ## 2. Example
 * Get sequences distribution in FASTA/Q format:
 
-for one FASTA/Q file
-```commandline
-fastaStat.py in.fa > in.fa.stat
-fastqStat.py in.fq > in.fq.stat
-```
-for multi FASTA/Q files
+for FASTA/Q files, different formatted files can be stat together
+
 ```commandline
-fastaStat.py 1.fa 2.fa *.fa > in.fa.stat
-fastqStat.py 1.fq 2.fq *.fq > in.fq.stat
+Seqstat.py 1.fq *.fa > in.stat
 ```
+
 use '-c' to speed up the process
 ```commandline
-fastaStat.py -c 10 1.fa 2.fa *.fa > in.fa.stat
-fastqStat.py -c 10 1.fq 2.fq *.fq > in.fq.stat
+Seqstat.py -c 10 1.fq *.fa > in.stat
 ```
+
 for one file contains FASTA/Q file paths
 ```commandline
-fastaStat.py -f in.fofn > in.fa.stat
-fastqStat.py -f in.fofn > in.fq.stat
+Seqstat.py -f -c 10 in.fofn > in.stat
 ```
-for *NGS short reads*, you'd better turn on *'-ngs'* to avoid out of memory 
+
+for *NGS short reads*, you'd better turn on *'-ngs'* to avoid meaningless stat
 ```commandline
-fastqStat.py -ngs -c 10 *.R1.fq *.R2.fq
+Seqstat.py -ngs -c 10 *.R1.fq *.R2.fq
 ```
+
 * Split large sequences file in FASTA/Q format into small files:
 
 split by sequences number == {max number} per file  

test/test.py

@@ -16,7 +16,7 @@ def test_fasta():
     with open("test.fasta", "w") as out:
         out.write(fasta_record)
 
-    os.system("python ../fastaStat.py test.fasta")
+    os.system("python ../SeqStat.py test.fasta")
     os.system("python ../fastaSplit.py -m length -n 1 -o fasta test.fasta")
 
 
@@ -40,7 +40,7 @@ def test_fastq():
     with open("test.fastq", "w") as out:
         out.write(fastq_record)
 
-    os.system("python ../fastqStat.py test.fastq")
+    os.system("python ../Seqstat.py test.fastq")
     os.system("python ../fastqSplit.py -m length -n 1 -o fastq test.fastq")