ProtacKB

Welcome to ProtacKB GitHub!!

ProtacKB is a knowledge graph (KG) built for ProxiDrugs, a project aimed at developing new class of proximity-induced drugs that allow targeted degradation of disease-associated proteins.

Currently, ProtacKB uses ProtacDB, ProtacPEDIA and PubChem as main sources of protacs. Additionally, the KG is enrinched with knowledge from ubinet 2.0, DrugCentral and DisGeNET, OpenTargets, ChEMBL and UniProt.

The KG consists of 9287 nodes, 22103 edges and 13 unique entities.

Name		Name	Last commit message	Last commit date
Latest commit History 64 Commits
data		data
.gitattributes		.gitattributes
.gitignore		.gitignore
Create_ProtacKB.py		Create_ProtacKB.py
ProtacKB_prototype.py		ProtacKB_prototype.py
Ptac_V1.py		Ptac_V1.py
Ptac_V2.py		Ptac_V2.py
Ptac_V3.py		Ptac_V3.py
Ptac_V4.py		Ptac_V4.py
Ptac_V5.py		Ptac_V5.py
README.md		README.md
Relationship.py		Relationship.py
Untitled.ipynb		Untitled.ipynb
Warhead.csv		Warhead.csv
WorkingWithUniprotIDs.ipynb		WorkingWithUniprotIDs.ipynb
chemStr.py		chemStr.py
chembl.py		chembl.py
connection.py		connection.py
constants.py		constants.py
file		file
iglue_compounds.csv		iglue_compounds.csv
loadImage.py		loadImage.py
main.py		main.py
protac_compounds.csv		protac_compounds.csv
test.py		test.py
utils.py		utils.py

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