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Finding intergenic nucleotide sequences in Fasta format between query gene and upstream gene

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Steps:

  1. Download and Install Conda (https://docs.anaconda.com/anaconda/install/)

  2. Download the eUIgene tool from github

  3. Install Conda Environment:

    cd eUIgene/

    bash ./build.sh

  4. Activate eUIgene Environment

  5. Run eUIgene script: # eUIgene.py is located inside script directory

    python3 eUIgene.py -ot exampleInput_flagsout_TreeOrder_operon.tsv -p 300 -o exampleOutput

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Finding intergenic nucleotide sequences in Fasta format between query gene and upstream gene

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