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Fix config; use latest Apollo and JBrowse versions
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garrettjstevens committed Dec 17, 2024
1 parent 67a1af2 commit 4c0fe4d
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# Setting up

To run this demo, you'll need to have
[Docker](//docs.docker.com/engine/install/) and
[Docker Compose](//docs.docker.com/compose/install/) installed.
[Docker](//docs.docker.com/engine/install/) (minimum version 27) and
[Docker Compose](//docs.docker.com/compose/install/) (minimum version 2.17.0)
installed.

## Getting the data

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set -o nounset
set -o pipefail
cat /usr/local/apache2/conf/httpd.conf.append >> /usr/local/apache2/conf/httpd.conf
wget https://github.com/GMOD/jbrowse-components/releases/download/v2.15.4/jbrowse-web-v2.15.4.zip
unzip -o jbrowse-web-v2.15.4.zip
rm jbrowse-web-v2.15.4.zip
wget --output-document=- --quiet https://registry.npmjs.org/@apollo-annotation/jbrowse-plugin-apollo/-/jbrowse-plugin-apollo-0.1.21.tgz | \
wget https://github.com/GMOD/jbrowse-components/releases/download/v2.18.0/jbrowse-web-v2.18.0.zip --output-document=jbrowse-web.zip
unzip -o jbrowse-web.zip
rm jbrowse-web.zip
wget --output-document=- --quiet https://registry.npmjs.org/@apollo-annotation/jbrowse-plugin-apollo/-/jbrowse-plugin-apollo-0.2.2.tgz | \
tar --extract --gzip --file=- --strip=2 package/dist/jbrowse-plugin-apollo.umd.production.min.js
mv jbrowse-plugin-apollo.umd.production.min.js apollo.js
wget --quiet https://github.com/The-Sequence-Ontology/SO-Ontologies/raw/refs/heads/master/Ontology_Files/so.json
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Expand Up @@ -58,8 +58,7 @@ a single default profile. Run these commands:
```sh
apollo config address http://host.docker.internal/apollo
apollo config accessType root
apollo config rootCredentials.username root
apollo config rootCredentials.password password
apollo config rootPassword password
apollo login
```

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