Misc #36
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: JBrowse CI | |
| on: push | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| perl: [5.26] #for full testing['5.26', '5.14'] | |
| node: [14] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Node.js ${{ matrix.node }} | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: ${{ matrix.node }} | |
| - name: Add yarn | |
| run: | | |
| npm install -g yarn | |
| - uses: LizardByte/setup-python-action@master | |
| with: | |
| python-version: '2.7' | |
| - name: Set up Perl ${{ matrix.perl }} | |
| uses: shogo82148/actions-setup-perl@v1 | |
| with: | |
| perl-version: ${{ matrix.perl }} | |
| - name: Install system dependencies | |
| run: | | |
| sudo dpkg --add-architecture i386 | |
| sudo apt-get update | |
| sudo apt-get install -y libdb-dev libgdchart-gd2-xpm-dev wine | |
| - name: Install Firefox | |
| uses: browser-actions/setup-firefox@latest | |
| - name: Install Geckodriver | |
| run: | | |
| GECKODRIVER_VERSION=0.36.0 | |
| mkdir ~/geckodriver_${GECKODRIVER_VERSION} | |
| wget -O - https://github.com/mozilla/geckodriver/releases/download/v0.36.0/geckodriver-v0.36.0-linux64.tar.gz | tar -xzf - -C ~/geckodriver_${GECKODRIVER_VERSION} | |
| echo "${HOME}/geckodriver_${GECKODRIVER_VERSION}" >> $GITHUB_PATH | |
| - name: Install Perl dependencies | |
| run: | | |
| cpanm --notest GD::Image Text::Markdown DateTime JSON | |
| - name: Install Python dependencies | |
| run: | | |
| pip install nose selenium | |
| - name: Set package versions for release | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: | | |
| build/set_package_versions.pl ${GITHUB_REF#refs/tags/} src/JBrowse/package.json package.json website/siteConfig.js | |
| - name: Get release version | |
| run: | | |
| echo "RELEASE_VERSION=$(node -e 'require("fs").readFile("src/JBrowse/package.json", (e,d)=>console.log(JSON.parse(d).version))')" >> $GITHUB_ENV | |
| - name: Setup JBrowse | |
| if: always() | |
| run: | | |
| JBROWSE_BUILD_MIN=0 ./setup.sh | |
| - name: Lint | |
| run: yarn lint | |
| - name: Run Perl tests | |
| run: prove -Isrc/perl5 -r -j3 tests/perl_tests | |
| - name: Run JS tests with Puppeteer | |
| run: | | |
| utils/jb_run.js -p 9000 & sleep 2 | |
| node tests/js_tests/run-puppeteer.js http://localhost:9000/tests/js_tests/index.html | |
| utils/jb_run.js -p 8000 -s jbrowse & sleep 2 | |
| node tests/js_tests/run-puppeteer.js http://localhost:8000/jbrowse/tests/js_tests/index.html | |
| - name: Run Electron tests | |
| run: | | |
| sudo apt-get install -y xvfb | |
| xvfb-run node_modules/.bin/ava --timeout=60s tests/electron_tests | |
| - name: Run Selenium tests | |
| run: | | |
| MOZ_HEADLESS=1 SELENIUM_BROWSER=firefox JBROWSE_URL=http://localhost:9000/index.html tests/selenium_tests/travis_wrapper.sh | |
| - name: Build release packages | |
| if: | |
| github.ref == 'refs/heads/master' || github.ref == 'refs/heads/dev' || | |
| startsWith(github.ref, 'refs/tags/') || github.event_name == | |
| 'pull_request' | |
| run: | | |
| make -f build/Makefile | |
| rm -rf JBrowse-*/ | |
| unzip -q JBrowse-${{ env.RELEASE_VERSION }}.zip | |
| cd JBrowse-${{ env.RELEASE_VERSION }}/ | |
| cp -r ../tests/ . | |
| ./setup.sh | |
| cd $GITHUB_WORKSPACE | |
| MOZ_HEADLESS=1 SELENIUM_BROWSER=firefox NOSEOPTS="-I jasmine" JBROWSE_URL=http://localhost:9000/JBrowse-${{ env.RELEASE_VERSION }}/index.html tests/selenium_tests/travis_wrapper.sh | |
| # remove symlink and copy actual files to dir for upload to s3 | |
| rm JBrowse-${{ env.RELEASE_VERSION }}/sample_data/raw/volvox | |
| cp -R docs/tutorial/data_files JBrowse-${{ env.RELEASE_VERSION }}/sample_data/raw/volvox | |
| - name: Build website | |
| run: website/build.sh | |
| - name: Upload build artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: jbrowse-build | |
| path: | | |
| JBrowse-*.zip | |
| website/build/jbrowse/ | |
| - name: Release to GitHub | |
| uses: softprops/action-gh-release@v1 | |
| if: startsWith(github.ref, 'refs/tags/') && matrix.perl == '5.26' | |
| with: | |
| files: JBrowse-*.zip | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Publish to npm | |
| if: startsWith(github.ref, 'refs/tags/') && matrix.perl == '5.26' | |
| run: | | |
| echo "//registry.npmjs.org/:_authToken=${{ secrets.NPM_TOKEN }}" > ~/.npmrc | |
| npm publish | |
| - name: Deploy to S3 (release) | |
| if: | |
| startsWith(github.ref, 'refs/tags/') && matrix.perl == '5.26' && | |
| contains(github.event.head_commit.message, '[update docs]') | |
| uses: jakejarvis/s3-sync-action@master | |
| with: | |
| args: --acl public-read --cache-control "max-age=1800" | |
| env: | |
| AWS_S3_BUCKET: jbrowse.org | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_KEY }} | |
| SOURCE_DIR: JBrowse-${{ env.RELEASE_VERSION }} | |
| DEST_DIR: code/JBrowse-${{ env.RELEASE_VERSION }} | |
| - name: Deploy website to S3 | |
| if: | |
| matrix.perl == '5.26' && contains(github.event.head_commit.message, | |
| '[update docs]') | |
| uses: jakejarvis/s3-sync-action@master | |
| with: | |
| args: --acl public-read --cache-control "max-age=1800" | |
| env: | |
| AWS_S3_BUCKET: jbrowse.org | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_KEY }} | |
| SOURCE_DIR: website/build/jbrowse/ |