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Redundans v2.00
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@Dfupa Dfupa released this 19 Jul 10:23
· 20 commits to master since this release
v2.00
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Learn about vigilant mode.

What's Changed

Major changes

  • Complete Python3 support
  • Performance mode (minimap2) or sensitivity mode (LASTal) for the reduction step
  • Reworked long read scaffolding step: either generate a dirty assembly based on the long reads (miniasm) to do reference scaffolding or use a graph based algorithm for scaffolding
  • Added K-mer composition spectra reporting plots (meryl and merqury)

Minor changes

  • Added GFA as additional output
  • Added an heterozygous contig report
  • Updated docker image and docker file.
  • Incorporated previous python submodules (FastaIndex, Pyscaf)

Contributors

Full Changelog: v1.01...v2.00

Contributors

Dfupa
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