update phenopy api

txt2hpo/nlp.py

@@ -72,7 +72,12 @@ def similarity_term_to_context(term, context, model):
     :return: float
     """
     def remove_out_of_vocab(tokens):
-        return [x for x in tokens if x in model.key_to_index]
+        try:
+            # gensim 3.8
+            return [x for x in tokens if x in model.vocab]
+        except AttributeError:
+            # gensim 4.0
+            return [x for x in tokens if x in model.wv.key_to_index]
 
     hpo_term = hpo_network.nodes[term]
     hpo_term_definition = hpo_term['name']

txt2hpo/util.py

@@ -2,7 +2,7 @@
 
 import math
 from phenopy.config import config as phenopy_config
-from phenopy import generate_annotated_hpo_network
+from phenopy.build_hpo import generate_annotated_hpo_network
 
 import sys
 import subprocess