test

Genometric · Jun 27, 2023 · 09295d0 · 09295d0
1 parent f175e61
commit 09295d0
Showing 1 changed file with 5 additions and 4 deletions.
diff --git a/.github/workflows/sv_pipeline_docker.yml b/.github/workflows/sv_pipeline_docker.yml
@@ -4,6 +4,7 @@ on:
   push:
     branches:
       - main
+      - workflow_bug2
     paths:
       - 'src/**'
       - 'dockerfiles/**'
@@ -12,6 +13,7 @@ on:
   pull_request:
     branches:
       - main
+      - workflow_bug2
     paths:
       - 'src/**'
       - 'dockerfiles/**'
@@ -207,16 +209,15 @@ jobs:
         id: build_and_publish
         run: |
           python ./scripts/docker/build_docker.py \
-            --base-git-commit ${{ needs.build_args_job.outputs.base_sha }} \
-            --current-git-commit ${{ needs.build_args_job.outputs.head_sha }} \
-            --docker-repo us.gcr.io/${{ secrets.GCP_PROJECT_ID }}/gatk-sv \
+            --targets manta \
+            --docker-repo us.gcr.io/${{ secrets.GCP_PROJECT_ID }}/gatk-sv ${{ secrets.AZ_CR }} \
             --image-tag ${{ needs.build_args_job.outputs.image_tag }} \
             --input-json $DOCKERS_AZURE $DOCKERS_GCP \
             --output-json $DOCKERS_AZURE $DOCKERS_GCP \
             --disable-git-protect
           
           CHANGED=$(git diff --quiet $DOCKERS_GCP || echo True)
-          echo "::set-output name=CHANGED::$CHANGED"
+          echo "CHANGED=$CHANGED" >> $GITHUB_OUTPUT
 
       - name: Commit Changes to dockers_*.json
         if: steps.build_and_publish.outputs.CHANGED