Skip to content

Commit

Permalink
"Needs review" removed
Browse files Browse the repository at this point in the history
  • Loading branch information
tylermcinnes committed May 15, 2024
1 parent 13d7f7c commit 7c37aef
Showing 1 changed file with 0 additions and 1 deletion.
1 change: 0 additions & 1 deletion docs/episodes/9.2.md
Original file line number Diff line number Diff line change
Expand Up @@ -168,7 +168,6 @@ First, we need to define a simple table with information about our samples - we

- Now we can do the DA test, explicitly defining our experimental design. In this case as discussed we will test the difference between sample groups. The testNhoods function calculates a Fold-change and corrected P-value for each neighbourhood, which indicates whether there is significant differential abundance between sample groups.

!!! warning "Following needs a review as `da_results <- testNhoods...` takes ~10 minutes. data frame `da_results` was exported as a csv to `/nesi/project/nesi02659/sc-rna/R_objects/da_results.csv` "

```r
# run DA test
Expand Down

0 comments on commit 7c37aef

Please sign in to comment.