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# (Session) Keynote Speakers

* Session 1: Reproducibility Challenges
[**J. Gregory Caporaso**](https://www.tgen.org/faculty-profiles/j-gregory-caporaso/) (Northern Arizona University, The Translational Genomics Research Institute)

* Session 4: Challenges of ‘Omic data reuse - IMMSA
[**Jonathan Eisen**](https://biology.ucdavis.edu/people/jonathan-eisen) (UC Davis Genome Center)
[**J. Gregory Caporaso**](https://www.tgen.org/faculty-profiles/j-gregory-caporaso/) (Northern Arizona University, The Translational Genomics Research Institute): Reproducing, replicating and replaying
bioinformatics workflows

* Session 5: Genomics and Standards challenges
[**Jack Gilbert**](https://gilbertlab.ucsd.edu/) (UCSD)
[**Jack Gilbert**](https://gilbertlab.ucsd.edu/) (UCSD): Precision microbiome medicine and standards

* Session 6: Reproducibility Challenges to Solutions
[**Rachel Gallery**](https://nature.arizona.edu/rachel-gallery) (University of Arizona)
[**Elisha Wood-Charlson**] (https://www.kbase.us/team/) (Lawrence Berkeley National Laboratory, KBase): Going beyond FAIR to COPE with complex biological data



# Dawn Field Awardee
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## Agenda Schedule

* **Monday, August 5 GSC board meeting** [Bio5](https://bio5.org/)
* 1:00-4:00 pm: Board Meeting; 5:00 pm: Board Dinner
* 1:00-4:00 pm: Board Meeting; 5:30 pm: Board Dinner

* **Tuesday, August 6 GSC main meeting** (**8:45 am - 5:00 pm**)
* **Session 1: Reproducibility Challenges**
* 9:00-9:30am: **Keynote: [Greg Caporaso](https://www.tgen.org/faculty-profiles/j-gregory-caporaso/) (Northern Arizona University, The Translational Genomics Research Institute)**
* 9:30-9:50 [Chris Hunter](https://www.linkedin.com/in/chr1shunter/) (GigaScience)
* 9:50-10:10 [Susanna-Assunta Sansone](https://eng.ox.ac.uk/people/susanna-assunta-sansone/) (OICR, University
of Oxford, UK)
* 10:10-10:20 [Brian Coullahan](https://www.linkedin.com/in/brian-coullahan-b42b5a1/), [Element Biosciences](https://www.elementbiosciences.com)
* 8:45-9:00 Check In; Meeting Opening: GSC President: Lynn Schriml, Local Hosts: Bonnie Hurwitz & Ramona Walls
* 9:00-9:30am: **Keynote: [Greg Caporaso](https://www.tgen.org/faculty-profiles/j-gregory-caporaso/) (Northern Arizona University, The Translational Genomics Research Institute)**: Reproducing, replicating and replaying bioinformatics workflows.
* 9:30-9:50 [Chris Hunter](https://www.linkedin.com/in/chr1shunter/) (GigaScience): The reproducibility challenges in publishing.
* 9:50-10:10 [Susanna-Assunta Sansone](https://eng.ox.ac.uk/people/susanna-assunta-sansone/) (OICR, University of Oxford, UK): [FAIRsharing, FAIRshake – challenges](https://docs.google.com/document/d/1VfMTz4EYfKtCG31Swt8jt7FUI-BeyArb/edit): Reproducibility across
contexts: spotlight on TIER2.
* 10:10-10:20 [Shawn Levy](https://www.elementbiosciences.com/about/team/shawn-levy), [Element Biosciences](https://www.elementbiosciences.com): Avidity Sequencing on the AVITI System - Sequencing Reimagined.
* 10:20-11:00 Coffee Break
* 11:00-11:20 [João Carlos Setubal](https://www.iq.usp.br/setubal/index-en.html) (University of São Paulo)
* 11:20-11:40 [Elisha Wood-Charlson](https://www.kbase.us/team/) (Lawrence Berkeley National Laboratory, KBase)
* 11:40-12:00 [Taukondjo Shikongo](https://enb.iisd.org/10-years-nagoya-protocol-successes-challenges-looking-forward) [(Convention on Biological Diversity)](https://www.cbd.int)
* 11:00-11:20 [João Carlos Setubal](https://www.iq.usp.br/setubal/index-en.html) (University of São Paulo): An Anecdote regarding Metagenome Data Access, and the lessons we can learn from it.
* 11:20-11:40 [Bonnie Hurwitz](https://profiles.arizona.edu/person/bhurwitz) (University of Arizona, Bio5 Institute): Planet Microbe: a platform that integrates microbiological, genomic, ecological, oceanographic, and computational methods through FAIR data.
* 11:40-12:00 [Taukondjo Shikongo](https://enb.iisd.org/10-years-nagoya-protocol-successes-challenges-looking-forward) [(Convention on Biological Diversity)](https://www.cbd.int):Nagoya Protocol and Digital Sequence Information Rights. (Zoom)
* 12:00-1:30 pm Lunch
* 1:30-2:00 Dawn Field Award: [Savvas Paragkamian](https://imbbc.hcmr.gr/user/s-paragkamian/) (Institute of Marine Biology,Biotechnology and Aquaculture (IMBBC))
* 2:00-3:00 pm: Reproductibility Challenges panel discussion
* 1:30-2:00 Dawn Field Award: [Savvas Paragkamian](https://imbbc.hcmr.gr/user/s-paragkamian/) (Institute of Marine Biology,Biotechnology and Aquaculture (IMBBC)):Data integration and reproducibility, the case of the Island Sampling Day in Crete.
* 2:00-3:00 pm: Panel: Reproductibility Challenges panel discussion
* 3:00-3:30 Coffee Break & Group Photo
* 3:30-4:45 Afternoon Working Groups
* CIG - MIxS standards & GA4GH experimental metadata hackathon
* 4:45pm Reception transportation pickup, departing from Bio5
* 5:30-7:30 pm**: Opening Reception at [Arizona Sonora Desert Museum](https://desertmuseum.org/)
* 5:30-7:30 pm: Opening Reception at [Arizona Sonora Desert Museum](https://desertmuseum.org/)
* Transportation provided

* **Wednesday, August 7 GSC main meeting and Standards Working Groups**
* **Session 2: Virome Genomic Standards**
* 9:00-9:20 [Stacy Carrington-Lawrence](https://www.nia.nih.gov/about/staff/carrington-lawrence-stacy) (NIH/NIA/ERP) - NIH Virome
Program
* 9:20-9:40 [Arvind Varsani](https://search.asu.edu/profile/3050059) (Arizona State University)
* 9:40-10:00 [Simon Roux](https://jgi.doe.gov/our-science/scientists-jgi/simon-roux/) (DOE Joint Genome
Institute)
* 10:00-10:15 [Kris Locken](https://www.linkedin.com/in/kristopher-locken-a5a071a3/) [(Zymo)](https://www.zymoresearch.com)
* 8:45-9:00 Day 2 Announcements
* 9:00-9:20 [Stacy Carrington-Lawrence](https://www.nia.nih.gov/about/staff/carrington-lawrence-stacy) (NIH/NIA Division of Aging Biology): NIH Human Virome Program; Opportunities and Challenges for Cross Consortium Standardization.
* 9:20-9:40 [Arvind Varsani](https://search.asu.edu/profile/3050059) (Arizona State University):The diverse world of eukaryote-infecting viruses + genomic standards = huge challenge.
* 9:40-10:00 [Simon Roux](https://jgi.doe.gov/our-science/scientists-jgi/simon-roux/) (DOE Joint Genome Institute): 5 years of viromics standard: success, challenges, and future of the MIUViG checklist.
* 10:00-10:15 [Yi Xu ](https://www.linkedin.com/in/clareyixu0203/) [(Zymo)](https://www.zymoresearch.com): One for All: RNA-Seq’s Growing Role in Unraveling Microbial
Transcriptomes.
* 10:15-11:00 Coffee Break

* **Session 3: Omic Standards**
* 11:00-11:20 [Ramona Walls](https://www.linkedin.com/in/ramona-walls-41aa7599/) (Critical Path Institute)
* 11:20-11:40 [Ruth Timme](https://www.linkedin.com/in/ruth-e-timme-2615248/) (FDA, Office of Regulatory Science)
* 11:40-12:00 [Tim Van Den Bossche](https://www.linkedin.com/in/vandenbosschetim) (Ghent University)
* 11:00-11:20 [Ramona Walls](https://www.linkedin.com/in/ramona-walls-41aa7599/) (Critical Path Institute): The Research, Technology, Standards Triangle in 'Omics.
* 11:20-11:40 [Ruth Timme](https://www.linkedin.com/in/ruth-e-timme-2615248/) [(FDA, Center for Food Safety and Applied Nutrition)](https://www.fda.gov/about-fda/fda-organization/center-food-safety-and-applied-nutrition-cfsan): GenomeTrakr’s Efforts to Improve ​Pathogen Data Standards: ​Advancing Interoperability for ​Public and Private Repositories.
* 11:40-12:00 [Tim Van Den Bossche](https://www.linkedin.com/in/vandenbosschetim) (Ghent University):Challenges and solutions for metadata management in metaproteomics.
* 12:00-1:00 pm Lunch
* 1:00-1:20 [Peter Woollard](https://www.embl.org/people/person/peter-woollard/) (EMBL-EBI)
* 1:20-1:40 [Neil Davies](https://www.moorea.berkeley.edu/people/Neil-Davies) (Gump South Pacific Research
Station)
* 1:40-2:00 [Briana Benton](https://www.atcc.org/blogs/2024/taxonomic-classification-can-sometimes-be-a-strain) (ATCC)
* 2:00-2:20 [Tianyi Wang](https://www.linkedin.com/in/tianyi-wang-3432429a/) (George Washington University)
* 2:30-5:00 Workshops: Afternoon Working Groups
* TDWG - CIG interactions & NMDC Field Notes mobile app workshop
* 1:00-1:20 [Peter Woollard](https://www.embl.org/people/person/peter-woollard/) (EMBL-EBI): eDNAqua-Plan: Exploring Standards in Aquatic eDNA, Presented by Peter Woollard, EMBL-EBI.
* 1:20-1:40 [Neil Davies](https://www.moorea.berkeley.edu/people/Neil-Davies) (Gump South Pacific Research Station): Sampling Nature and Omic Observatories in an AI World.
* 1:40-2:00 [Briana Benton](https://www.atcc.org/blogs/2024/taxonomic-classification-can-sometimes-be-a-strain) (ATCC): Setting the Standard in Microbial Genomics: Using Reference Assemblies from the ATCC® Genome Portal as Ground Truth.
* 2:00-2:20 [Tianyi Wang](https://www.linkedin.com/in/tianyi-wang-3432429a/) (George Washington University):BioCompute Objects: A Standard for Transparent and Reproducible Omic Data Analysis Communication.
* 2:30-3:00 Coffee Break
* 3:00-5:00 Workshops: Afternoon Working Groups
* TDWG - CIG interactions & [NMDC](https://microbiomedata.org/) Field Notes mobile app workshop.

* **Thursday, August 8 GSC main meeting**
* **Session 4: Challenges of ‘Omic data reuse - IMMSA** [(International Microbiome and Multi’Omics
Standards Alliance)](https://www.microbialstandards.org/home)
* 9:00-9:10 [Scott Jackson](https://www.nist.gov/people/scott-jackson) (NIST - National Institute of Standards
and Technology)
* 9:10-9:30 [Ben Callahan](https://cvm.ncsu.edu/people/bcallah/) (NC State University, College of Veterinary
Medicine)
* 9:30-9:50 [Julie Dunning Hotopp](https://www.medschool.umaryland.edu/profiles/dunning-hotopp-julie-c/) (Institute for Genome Sciences, University of Maryland School of Medicine)
* **Session 4: Challenges of ‘Omic data reuse - IMMSA** [(International Microbiome and Multi’Omics Standards Alliance)](https://www.microbialstandards.org/home) Session Chairs: Ishi Keenum and Jason Kralj
* 8:45-9:00 Day 3 Announcements
* 9:00-9:10 [Scott Jackson](https://www.nist.gov/people/scott-jackson) (NIST - National Institute of Standards and Technology): History of IMMSA.
* 9:10-9:30 [Ben Callahan](https://cvm.ncsu.edu/people/bcallah/) (NC State University, College of Veterinary Medicine): Training on one study and predicting on another using publicly available microbiome datasets.
* 9:30-9:50 [Julie Dunning Hotopp](https://www.medschool.umaryland.edu/profiles/dunning-hotopp-julie-c/) (Institute for Genome Sciences, University of Maryland School of Medicine):A “Research Parasite’s” Perspectives on the Challenges of Data Reuse.
* 9:50-10:30 Coffee Break

* 10:30-11:00 **Keynote: [Jonathan Eisen](https://biology.ucdavis.edu/people/jonathan-eisen) (UC Davis Genome Center)**
* 11:00-12:00 IMMSA Panel Discussion Panel: Data reuse challenges identified in the last year.
* 12:00-1:00 pm Lunch
* 10:30-11:45 Panel: IMMSA Panel Discussion Panel: Data reuse challenges identified in the last year.
* 11:45-1:00 pm Lunch

* **Session 5: Genomics and Standards challenges**
* 1:00-1:20 [Melanie Culver](https://nature.arizona.edu/melanie-culver) (University of Arizona)
* 1:20-1:40 [Dario Copetti](https://www.linkedin.com/in/dario-copetti-65ba528/) (Arizona Genomics Institute)
* 1:40-2:00 [Ryan Bartelme](https://www.linkedin.com/in/ryan-bartelme/) (Pivot Bio)

* 2:00-2:30 pm **Keynote: [Jack Gilbert](https://gilbertlab.ucsd.edu/) (UCSD)**
* 1:00-1:20 [Melanie Culver](https://nature.arizona.edu/melanie-culver) (University of Arizona):Genomic Challenges in Non-Model and Endangered Species.
* 1:20-1:40 [Dario Copetti](https://www.linkedin.com/in/dario-copetti-65ba528/) (Arizona Genomics Institute):Saguaro genomics across technologies and (new) standards.
* 1:40-2:00 [Ryan Bartelme](https://www.linkedin.com/in/ryan-bartelme/) (Pivot Bio):Challenges with 'omics operations and standards in agriculture technology.
* 2:00-2:30 pm **Keynote: [Jack Gilbert](https://gilbertlab.ucsd.edu/) (UCSD)**: Precision microbiome medicine and standards.
* 2:30-3:30 Coffee Break
* 3:30-5:00 Afternoon Working Groups: iSamples, OmicBON
* 3:30-5:00 Afternoon Working Groups: iSamples/OmicBON


* **Friday, August 9 GSC main meeting**
* 8:45 Handoff GSC26
* 9:00-9:30 **Keynote: [Rachel Gallery](https://nature.arizona.edu/rachel-gallery) (University of Arizona)**
* 9:00-9:30 **Keynote: [Elisha Wood-Charlson](https://www.kbase.us/team/) (Lawrence Berkeley National Laboratory, KBase)**: Going beyond FAIR to COPE with complex biological data.
* 9:30-10:00 Coffee Break

* **Session 6: Discussion of Reproducibility Challenges to Solutions**
* 10:00-12:00 Discussion of Challenges to Solutions
* 10:00-12:00 Panel:Discussion of Challenges to Solutions.
* 12:00 pm Lunch

## Thank you to our sponsors
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