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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| notes: Pairwise comparison without replicates with default parameter setting. | ||
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| data: | ||
| KO: | ||
| rep1: data/data/HEK293T-METTL3-KO-rep1/dataprep | ||
| WT: | ||
| rep1: data/data/HEK293T-WT-rep1/dataprep | ||
|
|
||
| out: ./out | ||
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||
| method: | ||
| prefiltering: | ||
| method: t-test | ||
| threshold: 0.1 | ||
|
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xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/data.index
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| idx,start,end | ||
| ENSG00000114125,0,743597 | ||
| ENSG00000159111,743597,1675247 |
2 changes: 2 additions & 0 deletions
2
xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/data.json
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3 changes: 3 additions & 0 deletions
3
xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/data.readcount
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| idx,n_reads | ||
| ENSG00000114125,178 | ||
| ENSG00000159111,125 |
308 changes: 308 additions & 0 deletions
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xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/eventalign.index
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,308 @@ | ||
| transcript_id,read_index,pos_start,pos_end | ||
| ENST00000351111.6,3,172,290405 | ||
| ENST00000351111.6,0,290405,614006 | ||
| ENST00000351111.6,1,614006,973714 | ||
| ENST00000351111.6,2,973714,1347872 | ||
| ENST00000351111.6,4,1347872,1631191 | ||
| ENST00000351111.6,5,1631191,1969909 | ||
| ENST00000351111.6,6,1969909,2287645 | ||
| ENST00000351111.6,7,2287645,2662912 | ||
| ENST00000351111.6,8,2662912,2983531 | ||
| ENST00000351111.6,10,2983531,3262408 | ||
| ENST00000351111.6,9,3262408,3639802 | ||
| ENST00000351111.6,11,3639802,3922204 | ||
| ENST00000351111.6,12,3922204,4213229 | ||
| ENST00000351111.6,15,4213229,4515039 | ||
| ENST00000351111.6,13,4515039,4931420 | ||
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| ENST00000351111.6,20,6267471,6594472 | ||
| ENST00000351111.6,16,6594472,7258428 | ||
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| ENST00000351111.6,23,8507117,8786265 | ||
| ENST00000351111.6,25,8786265,9089456 | ||
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| ENST00000351111.6,33,10553038,10891485 | ||
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| ENST00000351111.6,35,11561595,11884643 | ||
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| ENST00000351111.6,53,18189147,18610106 | ||
| ENST00000351111.6,54,18610106,19093035 | ||
| ENST00000351111.6,57,19093035,19440945 | ||
| ENST00000351111.6,59,19440945,19755236 | ||
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| ENST00000351111.6,79,26435538,26763183 | ||
| ENST00000351111.6,77,26763183,27162442 | ||
| ENST00000351111.6,80,27162442,27449600 | ||
| ENST00000351111.6,83,27449600,27741560 | ||
| ENST00000351111.6,82,27741560,28074012 | ||
| ENST00000351111.6,84,28074012,28490394 | ||
| ENST00000351111.6,81,28490394,29025715 | ||
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| ENST00000351111.6,86,29388415,29768741 | ||
| ENST00000351111.6,87,29768741,30018232 | ||
| ENST00000351111.6,88,30018232,30317250 | ||
| ENST00000351111.6,89,30317250,30607473 | ||
| ENST00000351111.6,91,30607473,30962887 | ||
| ENST00000351111.6,92,30962887,31271389 | ||
| ENST00000351111.6,90,31271389,31675532 | ||
| ENST00000351111.6,93,31675532,31958143 | ||
| ENST00000351111.6,96,31958143,32143515 | ||
| ENST00000351111.6,95,32143515,32461911 | ||
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| ENST00000351111.6,99,32726264,32857076 | ||
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| ENST00000351111.6,100,33268237,33398024 | ||
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| ENST00000351111.6,102,33791888,33877589 | ||
| ENST00000290208.11,103,33877589,34232879 | ||
| ENST00000290208.11,106,34232879,34519193 | ||
| ENST00000290208.11,105,34519193,34936092 | ||
| ENST00000290208.11,104,34936092,35342886 | ||
| ENST00000290208.11,108,35342886,35560872 | ||
| ENST00000290208.11,109,35560872,35777127 | ||
| ENST00000290208.11,110,35777127,36062292 | ||
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| ENST00000290208.11,113,36633410,36850118 | ||
| ENST00000290208.11,114,36850118,37070999 | ||
| ENST00000290208.11,111,37070999,37480194 | ||
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| ENST00000290208.11,116,37527587,37721584 | ||
| ENST00000290208.11,115,37721584,38039451 | ||
| ENST00000290208.11,117,38039451,38257277 | ||
| ENST00000414011.1,120,38257277,38488202 | ||
| ENST00000414011.1,119,38488202,38838405 | ||
| ENST00000414011.1,122,38838405,39176554 | ||
| ENST00000414011.1,121,39176554,39524577 | ||
| ENST00000414011.1,123,39524577,39757479 | ||
| ENST00000273480.3,127,39757479,39959655 | ||
| ENST00000421763.5,124,39959655,40306230 | ||
| ENST00000396651.7,125,40306230,40517292 | ||
| ENST00000273480.3,128,40517292,40745221 | ||
| ENST00000273480.3,129,40745221,40914633 | ||
| ENST00000273480.3,130,40914633,41204718 | ||
| ENST00000460110.5,126,41204718,41761301 | ||
| ENST00000273480.3,132,41761301,41965891 | ||
| ENST00000273480.3,133,41965891,42141899 | ||
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| ENST00000273480.3,134,42366171,42529145 | ||
| ENST00000273480.3,135,42529145,42744043 | ||
| ENST00000273480.3,137,42744043,42944582 | ||
| ENST00000273480.3,138,42944582,43113498 | ||
| ENST00000273480.3,139,43113498,43266826 | ||
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| ENST00000273480.3,147,44615946,44805516 | ||
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| ENST00000273480.3,150,45248164,45449485 | ||
| ENST00000273480.3,152,45449485,45615137 | ||
| ENST00000273480.3,153,45615137,45769256 | ||
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| ENST00000273480.3,193,52835119,53042700 | ||
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| ENST00000273480.3,203,54582252,54804889 | ||
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| ENST00000273480.3,221,57581983,57761611 | ||
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| ENST00000273480.3,222,58023128,58170143 | ||
| ENST00000273480.3,224,58170143,58319543 | ||
| ENST00000273480.3,223,58319543,58478824 | ||
| ENST00000273480.3,225,58478824,58621293 | ||
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| ENST00000273480.3,233,59788639,59992505 | ||
| ENST00000273480.3,234,59992505,60140187 | ||
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| ENST00000273480.3,251,62818158,62989623 | ||
| ENST00000273480.3,253,62989623,63147348 | ||
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| ENST00000273480.3,266,65991074,66214131 | ||
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| ENST00000273480.3,274,66451381,66586410 | ||
| ENST00000273480.3,272,66586410,66704800 | ||
| ENST00000273480.3,275,66704800,66766290 | ||
| ENST00000273480.3,273,66766290,66893784 | ||
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| ENST00000273480.3,280,67115069,67167105 | ||
| ENST00000480908.1,281,67167105,67247142 | ||
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| ENST00000393000.3,284,67598027,67750673 | ||
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| ENST00000393000.3,287,68235986,68421082 | ||
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| ENST00000393000.3,292,69021852,69169927 | ||
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| ENST00000393000.3,295,69525874,69670799 | ||
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| ENST00000477012.5,298,69850210,70080527 | ||
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This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| idx,start,end | ||
| ENSG00000114125,0,385701 | ||
| ENSG00000159111,385701,929888 | ||
| ENSG00000095380,929888,952343 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| idx,n_reads | ||
| ENSG00000114125,91 | ||
| ENSG00000159111,71 | ||
| ENSG00000095380,1 |
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