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Dev jg 0701 Show Diffs #1500

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jeffmgranja
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No need to merge this I just wanted to resolve conflicts to see what discrepancies were present!

jgranja-cartographybio and others added 23 commits July 13, 2022 18:19
Added some sparse utilities and new ArchR Arrow Matrix format from ijx -> indices,indptr,data,shape
make sure LSI projection in doublets contain correct dims
removing seqnames makes the warning of trimming genes null and we make sure that the genes do not go past integer ranges possible
update extendTSS to be by default TRUE since the user may not read the params
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