Minor changes

GuilhemSempere · Jan 4, 2024 · d3280a3 · d3280a3
1 parent 993b4c9
commit d3280a3
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/pom.xml b/pom.xml
@@ -57,7 +57,7 @@
         <dependency>
             <groupId>com.github.joschi.jackson</groupId>
             <artifactId>jackson-datatype-threetenbp</artifactId>
-            <version>2.12.5</version>
+            <version>2.13.5</version>
         </dependency>
     <!-- Bean Validation API support -->
 		<dependency>

diff --git a/src/main/java/org/brapi/v2/api/AttributevaluesApiController.java b/src/main/java/org/brapi/v2/api/AttributevaluesApiController.java
@@ -149,7 +149,7 @@ public ResponseEntity<GermplasmAttributeValueListResponse> searchAttributevalues
 
 	                Authentication auth = tokenManager.getAuthenticationFromToken(tokenManager.readToken(request));
 	                String sCurrentUser = auth == null || "anonymousUser".equals(auth.getName()) ? "anonymousUser" : auth.getName();
-	                LinkedHashMap<String, Individual> individuals = MgdbDao.getInstance().loadIndividualsWithAllMetadata(programDbId, sCurrentUser, null, germplasmIdsToReturn);
+	                LinkedHashMap<String, Individual> individuals = MgdbDao.getInstance().loadIndividualsWithAllMetadata(programDbId, sCurrentUser, null, germplasmIdsToReturn, null);
 
 	                ArrayList<GermplasmAttributeValue> data = new ArrayList<>();
 	                for (String individualId : individuals.keySet()) {

diff --git a/src/main/java/org/brapi/v2/api/CallsetsApiController.java b/src/main/java/org/brapi/v2/api/CallsetsApiController.java
@@ -232,7 +232,7 @@ public ResponseEntity<CallSetsListResponse> searchCallsetsPost(	@ApiParam(value
                                 indIdToSampleIdMap.put(sample.getIndividual(), sample.getId());
 
                         // attach individual metadata to callsets
-                        Map<String, Individual> indMap = MgdbDao.getInstance().loadIndividualsWithAllMetadata(db, sCurrentUser, null, indIdToSampleIdMap.keySet());
+                        Map<String, Individual> indMap = MgdbDao.getInstance().loadIndividualsWithAllMetadata(db, sCurrentUser, null, indIdToSampleIdMap.keySet(), null);
 
                                 for (int i=0; i<samples.size(); i++) {
                                         GenotypingSample sample = samples.get(i);

diff --git a/src/main/java/org/brapi/v2/api/GermplasmApiController.java b/src/main/java/org/brapi/v2/api/GermplasmApiController.java
@@ -239,7 +239,7 @@ else if (!fGotGermplasmNames && !fGotExtRefs) {
             }
 
             for (String database : dbsToAccountFor) {
-                for (Individual ind : MgdbDao.getInstance().loadIndividualsWithAllMetadata(database, sCurrentUser, !projectsByModuleFromSpecifiedStudies.isEmpty() ? projectsByModuleFromSpecifiedStudies.get(database) : null, !individualsByModuleFromSpecifiedGermplasm.isEmpty() ? individualsByModuleFromSpecifiedGermplasm.get(database) : null).values()) {
+                for (Individual ind : MgdbDao.getInstance().loadIndividualsWithAllMetadata(database, sCurrentUser, !projectsByModuleFromSpecifiedStudies.isEmpty() ? projectsByModuleFromSpecifiedStudies.get(database) : null, !individualsByModuleFromSpecifiedGermplasm.isEmpty() ? individualsByModuleFromSpecifiedGermplasm.get(database) : null, null).values()) {
 
                 	List synonyms = (List) ind.getAdditionalInfo().get("synonyms");
             		if (synonyms != null)