modify report to hide code

Report.html

@@ -15,69 +15,6 @@
 div.column{display: inline-block; vertical-align: top; width: 50%;}
 div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
 ul.task-list{list-style: none;}
-pre > code.sourceCode { white-space: pre; position: relative; }
-pre > code.sourceCode > span { display: inline-block; line-height: 1.25; }
-pre > code.sourceCode > span:empty { height: 1.2em; }
-.sourceCode { overflow: visible; }
-code.sourceCode > span { color: inherit; text-decoration: inherit; }
-div.sourceCode { margin: 1em 0; }
-pre.sourceCode { margin: 0; }
-@media screen {
-div.sourceCode { overflow: auto; }
-}
-@media print {
-pre > code.sourceCode { white-space: pre-wrap; }
-pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
-}
-pre.numberSource code
-  { counter-reset: source-line 0; }
-pre.numberSource code > span
-  { position: relative; left: -4em; counter-increment: source-line; }
-pre.numberSource code > span > a:first-child::before
-  { content: counter(source-line);
-    position: relative; left: -1em; text-align: right; vertical-align: baseline;
-    border: none; display: inline-block;
-    -webkit-touch-callout: none; -webkit-user-select: none;
-    -khtml-user-select: none; -moz-user-select: none;
-    -ms-user-select: none; user-select: none;
-    padding: 0 4px; width: 4em;
-    color: #aaaaaa;
-  }
-pre.numberSource { margin-left: 3em; border-left: 1px solid #aaaaaa;  padding-left: 4px; }
-div.sourceCode
-  {   }
-@media screen {
-pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
-}
-code span.al { color: #ff0000; font-weight: bold; } /* Alert */
-code span.an { color: #60a0b0; font-weight: bold; font-style: italic; } /* Annotation */
-code span.at { color: #7d9029; } /* Attribute */
-code span.bn { color: #40a070; } /* BaseN */
-code span.bu { } /* BuiltIn */
-code span.cf { color: #007020; font-weight: bold; } /* ControlFlow */
-code span.ch { color: #4070a0; } /* Char */
-code span.cn { color: #880000; } /* Constant */
-code span.co { color: #60a0b0; font-style: italic; } /* Comment */
-code span.cv { color: #60a0b0; font-weight: bold; font-style: italic; } /* CommentVar */
-code span.do { color: #ba2121; font-style: italic; } /* Documentation */
-code span.dt { color: #902000; } /* DataType */
-code span.dv { color: #40a070; } /* DecVal */
-code span.er { color: #ff0000; font-weight: bold; } /* Error */
-code span.ex { } /* Extension */
-code span.fl { color: #40a070; } /* Float */
-code span.fu { color: #06287e; } /* Function */
-code span.im { } /* Import */
-code span.in { color: #60a0b0; font-weight: bold; font-style: italic; } /* Information */
-code span.kw { color: #007020; font-weight: bold; } /* Keyword */
-code span.op { color: #666666; } /* Operator */
-code span.ot { color: #007020; } /* Other */
-code span.pp { color: #bc7a00; } /* Preprocessor */
-code span.sc { color: #4070a0; } /* SpecialChar */
-code span.ss { color: #bb6688; } /* SpecialString */
-code span.st { color: #4070a0; } /* String */
-code span.va { color: #19177c; } /* Variable */
-code span.vs { color: #4070a0; } /* VerbatimString */
-code span.wa { color: #60a0b0; font-weight: bold; font-style: italic; } /* Warning */
 </style>
 
 
@@ -117,6 +54,9 @@ <h1 class="title">Caribbean ESR</h1>
 
 </header>
 
+<div class="cell" data-warnings="false">
+
+</div>
 <section id="introduction" class="level1">
 <h1>Introduction</h1>
 <section id="about-this-report" class="level2">
@@ -130,27 +70,13 @@ <h2 class="anchored" data-anchor-id="report-structure">Report structure</h2>
 <section id="cool-indicators" class="level2">
 <h2 class="anchored" data-anchor-id="cool-indicators">Cool indicators</h2>
 <p>Wow, look at that aragonite saturation state…</p>
-<div class="cell">
-<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="fu">load</span>(<span class="st">"indicator_objects/OA.RData"</span>)</span>
-<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">plotIndicatorTimeSeries</span>(inddata)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
-<div class="cell-output cell-output-stderr">
-<pre><code>Loading required package: viridis</code></pre>
-</div>
-<div class="cell-output cell-output-stderr">
-<pre><code>Loading required package: viridisLite</code></pre>
-</div>
-<div class="cell-output cell-output-stderr">
-<pre><code>
-Try help(fields) to get started.</code></pre>
-</div>
+<div class="cell" data-warnings="false">
 <div class="cell-output-display">
 <p><img src="Report_files/figure-html/unnamed-chunk-1-1.png" class="img-fluid" width="672"></p>
 </div>
 </div>
 <p>Here is the gini index showing equality in distribution of revenues….</p>
 <div class="cell">
-<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="fu">load</span>(<span class="st">"indicator_objects/gini.RData"</span>)</span>
-<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a><span class="fu">plotIndicatorTimeSeries</span>(inddata, <span class="at">coltoplot =</span> <span class="dv">1</span><span class="sc">:</span><span class="dv">2</span>, <span class="at">plotrownum =</span> <span class="dv">2</span>, <span class="at">trendAnalysis =</span> T, <span class="at">sublabel =</span> T)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output-display">
 <p><img src="Report_files/figure-html/unnamed-chunk-2-1.png" class="img-fluid" width="672"></p>
 </div>

Report.qmd

@@ -2,9 +2,11 @@
 title: "Caribbean ESR"
 format: html
 editor: visual
+execute:
+  echo: false
 ---
 
-```{r setup, include = FALSE}
+```{r setup, message = FALSE, warnings = FALSE}
 library(plotTimeSeries)
 library(spam)
 ```
@@ -23,14 +25,14 @@ This is the structure of the report....
 
 Wow, look at that aragonite saturation state...
 
-```{r, include = T}
+```{r, message = FALSE, warnings = FALSE}
 load("indicator_objects/OA.RData")
-plotIndicatorTimeSeries(inddata)
+plotIndicatorTimeSeries(inddata, trendAnalysis = F)
 ```
 
 Here is the gini index showing equality in distribution of revenues....
 
 ```{r}
 load("indicator_objects/gini.RData")
-plotIndicatorTimeSeries(inddata, coltoplot = 1:2, plotrownum = 2, trendAnalysis = T, sublabel = T)
+plotIndicatorTimeSeries(inddata, coltoplot = 1:2, plotrownum = 2, trendAnalysis = F, sublabel = T)
 ```