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add TCRMP/PRCRMP indicators
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MandyKarnauskas-NOAA committed Jun 29, 2023
1 parent 127fb44 commit fcbbf91
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137 changes: 137 additions & 0 deletions indicator_data/TCRMP/BenthicCodes.csv
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Code,Group,Category,Meaning
CALG,Benthic Cover,Calcareous,Crustose coralline algae
RO,Benthic Cover,Calcareous,Rhodolith
AA,Benthic Cover,Coral,Agaricia agaricites
AC,Benthic Cover,Coral,Acropora cervicornis
AF,Benthic Cover,Coral,Agaricia fragilis
AG,Benthic Cover,Coral,Agaricia grahamae
AGSP,Benthic Cover,Coral,Agaricia spp.
AH,Benthic Cover,Coral,Agaricia humilis
AL,Benthic Cover,Coral,Agaricia lamarcki
AP,Benthic Cover,Coral,Acropora palmata
APR,Benthic Cover,Coral,Acropora prolifera
AT,Benthic Cover,Coral,Agaricia tenuifolia
AU,Benthic Cover,Coral,Agaricia undata
CN,Benthic Cover,Coral,Colpophyllia natans
CORAL,Benthic Cover,Coral,Coral spp.
CORJU,Benthic Cover,Coral,Juvenile coral spp.
DCY,Benthic Cover,Coral,Dendrogyra cylindrus
DL,Benthic Cover,Coral,Diploria labyrinthiformis
DSO,Benthic Cover,Coral,Dichocoenia stokesii
EF,Benthic Cover,Coral,Eusmilia fastigiata
FF,Benthic Cover,Coral,Favia fragum
HC,Benthic Cover,Coral,Helioseris cucullata
IR,Benthic Cover,Coral,Isopyhyllastrea rigida
IS,Benthic Cover,Coral,Isophyllia sinuosa
MAFO,Benthic Cover,Coral,Madracis formosa
MAL,Benthic Cover,Coral,Mycetophyllia aliciae
MAN,Benthic Cover,Coral,Mussa angulosa
MAR,Benthic Cover,Coral,Manicina areolata
MC,Benthic Cover,Coral,Montastraea cavernosa
MD,Benthic Cover,Coral,Madracis decactis
MDA,Benthic Cover,Coral,Mycetophyllia daniana
MF,Benthic Cover,Coral,Mycetophyllia ferox
MILA,Benthic Cover,Coral,Millepora alcicornis
MILC,Benthic Cover,Coral,Millepora complanata
MILS,Benthic Cover,Coral,Millepora squarrosa
ML,Benthic Cover,Coral,Mycetophyllia lamarckiana
MM,Benthic Cover,Coral,Madracis mirabilis
MME,Benthic Cover,Coral,Meandrina meandrites
MSPP,Benthic Cover,Coral,Montastraea spp.
MYSP,Benthic Cover,Coral,Mycetophyllia spp.
OA,Benthic Cover,Coral,Orbicella annularis
OD,Benthic Cover,Coral,Oculina diffusa
OFAV,Benthic Cover,Coral,Orbicella faveolata
OFRA,Benthic Cover,Coral,Orbicella franksii
OX,Benthic Cover,Coral,Orbicella species complex
PA,Benthic Cover,Coral,Porites astreoides
PB,Benthic Cover,Coral,Porites branneri
PBSP,Benthic Cover,Coral,Branching Porites spp.
PCL,Benthic Cover,Coral,Pseudodiploria clivosa
PD,Benthic Cover,Coral,Porites divaricata
PF,Benthic Cover,Coral,Porites furcata
PP,Benthic Cover,Coral,Porites porites
PS,Benthic Cover,Coral,Pseudodiploria strigosa
SB,Benthic Cover,Coral,Solenastrea bournoni
SC,Benthic Cover,Coral,Scolymia cubensis
SCSP,Benthic Cover,Coral,Scolymia spp.
SH,Benthic Cover,Coral,Solenastrea hyades
SI,Benthic Cover,Coral,Stephanocoenia intercepta
SL,Benthic Cover,Coral,Scolymia lacera
SR,Benthic Cover,Coral,Siderastrea radians
SS,Benthic Cover,Coral,Siderastrea siderea
SSPP,Benthic Cover,Coral,Siderastrea spp.
TC,Benthic Cover,Coral,Tubastraea coccinea
BBD,Benthic Cover,Coral Condition,Black band disease
BL,Benthic Cover,Coral Condition,Bleached coral
DCOR,Benthic Cover,Coral Condition,Diseased coral
DSD,Benthic Cover,Coral Condition,Dark spot disease
PLA,Benthic Cover,Coral Condition,White plague
SCTLD,Benthic Cover,Coral Condition,Stony coral tissue loss disease
WBD,Benthic Cover,Coral Condition,White band disease
YBD,Benthic Cover,Coral Condition,Yellow band disease
FLCY,Benthic Cover,Cyanobacteria,Filamentous cyanobacteria
LYNG,Benthic Cover,Cyanobacteria,Lyngbia spp.
SCHIZ,Benthic Cover,Cyanobacteria,Schizothrix spp.
BRIA,Benthic Cover,Gorgonian,Briareum asbestinum
ENGO,Benthic Cover,Gorgonian,Encrusting Gorgonian
ERYTH,Benthic Cover,Gorgonian,Erythropodium caribaeorum
FAN,Benthic Cover,Gorgonian,Sea fan
GO,Benthic Cover,Gorgonian,Gorgonian
PLUME,Benthic Cover,Gorgonian,Sea plume
ROD,Benthic Cover,Gorgonian,Sea rod
WHIP,Benthic Cover,Gorgonian,Sea whip
AMPH,Benthic Cover,Macroalgae,Amphiroa spp.
CLAD,Benthic Cover,Macroalgae,Cladophora spp.
DICT,Benthic Cover,Macroalgae,Dictyota spp.
HALI,Benthic Cover,Macroalgae,Halimeda spp.
LIAG,Benthic Cover,Macroalgae,Liagora spp.
LOBO,Benthic Cover,Macroalgae,Lobophora spp.
MACA,Benthic Cover,Macroalgae,Macroalgae
MICRO,Benthic Cover,Macroalgae,Microdictyon spp.
PEY,Benthic Cover,Macroalgae,Peyssonellia spp.
RAMI,Benthic Cover,Macroalgae,Ramicrusta spp.
SARG,Benthic Cover,Macroalgae,Sargassum spp.
B,Benthic Cover,Non-living,Boulder
P,Benthic Cover,Non-living,Pavement
R,Benthic Cover,Non-living,Rubble
S,Benthic Cover,Non-living,Sand
TWS,Benthic Cover,Non-living,"Transect tape, weighted line, or shadow"
UNK,Benthic Cover,Non-living,Unknown
ANEM,Benthic Cover,"Other, Living",Anemone
CMOR,Benthic Cover,"Other, Living",Corallimorpharians
O,Benthic Cover,"Other, Living",Other
BALL,Benthic Cover,Sponge,Ball sponge
BASP,Benthic Cover,Sponge,Barrel/Vase sponge
BOSP,Benthic Cover,Sponge,Boring sponge
CLIO,Benthic Cover,Sponge,Clionia delitrix
CLSP,Benthic Cover,Sponge,Cliona spp.
ENSP,Benthic Cover,Sponge,Encrusting sponge
ROPE,Benthic Cover,Sponge,Rope sponge
SPO,Benthic Cover,Sponge,Sponge
TUBE,Benthic Cover,Sponge,Tube sponge
EAC,Benthic Cover,Turf,Epilithic algae community
PALY,Benthic Cover,Zoanthid,Palythoa caribaeorum
ZO,Benthic Cover,Zoanthid,Zoanthids
ZOSO,Benthic Cover,Zoanthid,Zoanthus sociatus
%BBD,Caclulation,Percent Cover,Black band disease (as % of substrate)
%BL,Caclulation,Percent Cover,Bleached coral (as % of substrate)
%CALG,Caclulation,Percent Cover,Crustose coralline algae cover
%CORAL,Caclulation,Percent Cover,Coral cover
%CYAN,Caclulation,Percent Cover,Cyanobacteria cover
%DCOR,Caclulation,Percent Cover,Diseased coral (as % of substrate)
%DIS,Caclulation,Percent Cover,Total coral disease (as % of substrate)
%DSD,Caclulation,Percent Cover,Dark spot disease (as % of substrate)
%EAC,Caclulation,Percent Cover,Turf algae cover
%GO,Caclulation,Percent Cover,Gorgonian cover
%MACA,Caclulation,Percent Cover,Macroalgae cover
%NON-LIVING,Caclulation,Percent Cover,Non-living cover
%OTHER,Caclulation,Percent Cover,Other live cover
%PLA,Caclulation,Percent Cover,White plague (as % of substrate)
%SCTLD,Caclulation,Percent Cover,Stony coral tissue loss disease (as % of substrate)
%SPO,Caclulation,Percent Cover,Sponge cover
%UNK,Caclulation,Percent Cover,Unknown cover
%WBD,Caclulation,Percent Cover,White band disease (as % of substrate)
%YBD,Caclulation,Percent Cover,Yellow band disease (as % of substrate)
%ZOAN,Caclulation,Percent Cover,Zoanthid cover
TOT-TWS,Calculation,Points,"Total points minus tape, wand, and shadow"
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