Update to match develop and allow hdf5 as subdirectory build

HDFGroup · May 22, 2024 · 1717722 · 1717722
1 parent c5c3e3c
commit 1717722
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Showing 147 changed files with 4,448 additions and 1,026 deletions.
diff --git a/C/CMakeLists.txt b/C/CMakeLists.txt
@@ -1,5 +1,5 @@
 cmake_minimum_required (VERSION 3.12)
-PROJECT (HDF5Examples_C)
+project (HDF5Examples_C C)
 
 #-----------------------------------------------------------------------------
 # Build the C Examples

diff --git a/C/H5D/CMakeLists.txt b/C/H5D/CMakeLists.txt
@@ -221,33 +221,40 @@ if (H5EX_BUILD_TESTING)
             -E remove
             ${testname}.h5
     )
-    add_test (
-        NAME ${EXAMPLE_VARNAME}_${testname}
-        COMMAND "${CMAKE_COMMAND}"
-            -D "TEST_PROGRAM=$<TARGET_FILE:${EXAMPLE_VARNAME}_${testname}>"
-            -D "TEST_ARGS:STRING="
-            -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-            -D "TEST_EXPECT=0"
-            -D "TEST_OUTPUT=${testname}.out"
-            -D "TEST_REFERENCE=${testname}.tst"
-            -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_LIB_DIRECTORY}"
-            -P "${H5EX_RESOURCES_DIR}/runTest.cmake"
-    )
-    set_tests_properties (${EXAMPLE_VARNAME}_${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_${testname}-clearall)
-    if (HDF5_BUILD_TOOLS)
+    if (HDF5_USING_ANALYSIS_TOOL)
+      add_test (NAME ${EXAMPLE_VARNAME}_${testname} COMMAND ${CMAKE_CROSSCOMPILING_EMULATOR} $<TARGET_FILE:${EXAMPLE_VARNAME}_${testname}>)
+      set_tests_properties (${EXAMPLE_VARNAME}_${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_${testname}-clearall)
+    else ()
       add_test (
-          NAME ${EXAMPLE_VARNAME}_H5DUMP-${testname}
+          NAME ${EXAMPLE_VARNAME}_${testname}
           COMMAND "${CMAKE_COMMAND}"
-              -D "TEST_PROGRAM=${H5EX_HDF5_DUMP_EXECUTABLE}"
-              -D "TEST_ARGS:STRING=${ARGN};${testname}.h5"
+              -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
+              -D "TEST_PROGRAM=$<TARGET_FILE:${EXAMPLE_VARNAME}_${testname}>"
+              -D "TEST_ARGS:STRING="
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-              -D "TEST_OUTPUT=${testname}.ddl.out"
               -D "TEST_EXPECT=0"
-              -D "TEST_REFERENCE=${testname}.ddl"
+              -D "TEST_OUTPUT=${testname}.out"
+              -D "TEST_REFERENCE=${testname}.tst"
               -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_LIB_DIRECTORY}"
               -P "${H5EX_RESOURCES_DIR}/runTest.cmake"
       )
-      set_tests_properties (${EXAMPLE_VARNAME}_H5DUMP-${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_${testname})
+      set_tests_properties (${EXAMPLE_VARNAME}_${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_${testname}-clearall)
+      if (HDF5_BUILD_TOOLS)
+        add_test (
+            NAME ${EXAMPLE_VARNAME}_H5DUMP-${testname}
+            COMMAND "${CMAKE_COMMAND}"
+                -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
+                -D "TEST_PROGRAM=${H5EX_HDF5_DUMP_EXECUTABLE}"
+                -D "TEST_ARGS:STRING=${ARGN};${testname}.h5"
+                -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
+                -D "TEST_OUTPUT=${testname}.ddl.out"
+                -D "TEST_EXPECT=0"
+                -D "TEST_REFERENCE=${testname}.ddl"
+                -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_LIB_DIRECTORY}"
+                -P "${H5EX_RESOURCES_DIR}/runTest.cmake"
+        )
+        set_tests_properties (${EXAMPLE_VARNAME}_H5DUMP-${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_${testname})
+      endif ()
     endif ()
   endmacro ()
 

diff --git a/C/H5D/Makefile.am b/C/H5D/Makefile.am
@@ -5,12 +5,10 @@
 #
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html.  COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page.  It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
-# access to either file, you may request a copy from [email protected].
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://www.hdfgroup.org/licenses.
+# If you do not have access to either file, you may request a copy from
+# [email protected].
 ##
 ## Makefile.am
 ## Run automake to generate a Makefile.in from this file.

diff --git a/C/H5D/test.sh.in b/C/H5D/test.sh.in
@@ -6,12 +6,10 @@
 #
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
-# the files COPYING and Copyright.html.  COPYING can be found at the root
-# of the source code distribution tree; Copyright.html can be found at the
-# root level of an installed copy of the electronic HDF5 document set and
-# is linked from the top-level documents page.  It can also be found at
-# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
-# access to either file, you may request a copy from [email protected].
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://www.hdfgroup.org/licenses.
+# If you do not have access to either file, you may request a copy from
+# [email protected].
 
 srcdir=@srcdir@
 

diff --git a/C/H5FLT/CMakeLists.txt b/C/H5FLT/CMakeLists.txt
@@ -24,6 +24,14 @@ else ()
   set (BLOSC_AVAILABLE 0)
 endif ()
 
+option (ENABLE_BLOSC2 "Enable Library Building for blosc2 plugin" ON)
+if (ENABLE_BLOSC2)
+  set (BLOSC_AVAILABLE 1)
+  set (dyn_examples ${dyn_examples} h5ex_d_blosc2)
+else ()
+  set (BLOSC_AVAILABLE 0)
+endif ()
+
 option (ENABLE_BSHUF "Enable Library Building for bshuf plugin" ON)
 if (ENABLE_BSHUF)
   if (NOT CMAKE_C_COMPILER_ID STREQUAL "Intel")
@@ -188,6 +196,7 @@ if (H5EX_BUILD_TESTING)
       add_test (
           NAME ${EXAMPLE_VARNAME}_${testname}-ERR
           COMMAND "${CMAKE_COMMAND}"
+              -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
               -D "TEST_PROGRAM=$<TARGET_FILE:${EXAMPLE_VARNAME}_${testname}>"
               -D "TEST_ARGS:STRING=${ARGN}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
@@ -215,6 +224,7 @@ if (H5EX_BUILD_TESTING)
       add_test (
           NAME ${EXAMPLE_VARNAME}_${testname}
           COMMAND "${CMAKE_COMMAND}"
+              -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
               -D "TEST_PROGRAM=$<TARGET_FILE:${EXAMPLE_VARNAME}_${testname}>"
               -D "TEST_ARGS:STRING=${ARGN}"
               -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
@@ -234,7 +244,8 @@ if (H5EX_BUILD_TESTING)
         add_test (
             NAME ${EXAMPLE_VARNAME}_H5DUMP-${testname}
             COMMAND "${CMAKE_COMMAND}"
-               -D "TEST_PROGRAM=${H5EX_HDF5_DUMP_EXECUTABLE}"
+                -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
+                -D "TEST_PROGRAM=${H5EX_HDF5_DUMP_EXECUTABLE}"
                 -D "TEST_ARGS:STRING=--enable-error-stack;-p;${testname}.h5"
                 -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
                 -D "TEST_OUTPUT=${testname}.ddl.out"
@@ -251,6 +262,7 @@ if (H5EX_BUILD_TESTING)
         add_test (
             NAME ${EXAMPLE_VARNAME}_H5DUMP-${testname}
             COMMAND "${CMAKE_COMMAND}"
+                -D "TEST_EMULATOR=${CMAKE_CROSSCOMPILING_EMULATOR}"
                 -D "TEST_PROGRAM=${H5EX_HDF5_DUMP_EXECUTABLE}"
                 -D "TEST_ARGS:STRING=--enable-error-stack;-p;${testname}.h5"
                 -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
@@ -287,11 +299,13 @@ if (H5EX_BUILD_TESTING)
   add_custom_target(${EXAMPLE_VARNAME}_example_files ALL COMMENT "Copying files needed by example tests" DEPENDS ${example_files_list})
 
   foreach (h5_file ${dyn_examples})
-    if (${h5_file} MATCHES "h5ex_d_zfp")
-      ## special filter
-      ADD_H5_TEST (h5ex_d_zfp FILTERALL)
-    else ()
-      ADD_H5_TEST (${h5_file})
+    if (NOT HDF5_USING_ANALYSIS_TOOL)
+      if (${h5_file} MATCHES "h5ex_d_zfp")
+        ## special filter
+        ADD_H5_TEST (h5ex_d_zfp FILTERALL)
+      else ()
+        ADD_H5_TEST (${h5_file})
+      endif ()
     endif ()
   endforeach ()
 

diff --git a/C/H5FLT/h5ex_d_blosc.c b/C/H5FLT/h5ex_d_blosc.c
@@ -42,7 +42,7 @@ main(void)
     herr_t             status;
     htri_t             avail;
     H5Z_filter_t       filter_id = 0;
-    char               filter_name[80];
+    char               filter_name[128];
     hsize_t            dims[2] = {DIM0, DIM1}, chunk[2] = {CHUNK0, CHUNK1};
     size_t             nelmts = 7; /* number of elements in cd_values */
     unsigned int       flags;