HDF5 2.0.0 updates #238
Workflow file for this run
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| name: linux | |
| on: | |
| pull_request: | |
| branches: [ develop ] | |
| push: | |
| branches: [ develop ] | |
| paths-ignore: | |
| - '**.md' | |
| - '**.txt' | |
| - 'docs/**' | |
| # Allows to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| vol-async-hdf5-latest-Makefile: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Checkout submodule Argobots | |
| uses: actions/[email protected] | |
| with: | |
| submodules: 'true' | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 | |
| - name: Checkout latest HDF5 release | |
| run: | | |
| wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz | |
| tar xzf hdf5.tar.gz | |
| ln -sf hdf5-* hdf5 | |
| - name: Installation | |
| run: | | |
| mydir="$PWD" | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export ABT_DIR=$mydir/argobots | |
| export VOL_DIR=$mydir | |
| mkdir $HDF5_DIR | |
| # Compile HDF5 | |
| cd hdf5 | |
| ./configure --prefix=$HDF5_DIR --enable-parallel --enable-threadsafe --enable-unsupported \ | |
| --disable-tests --disable-hl --disable-fortran --disable-tools | |
| make && make install | |
| # Compile Argobots | |
| cd $ABT_DIR | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make && make install | |
| # Compile Asynchronous VOL connector | |
| cd $VOL_DIR/src | |
| tail -n 48 Makefile.summit > Makefile | |
| make | |
| - name: Compile and Test Vol-Async | |
| run: | | |
| # Compile vol-async tests | |
| mydir="$PWD" | |
| cd $mydir | |
| cd test | |
| # Set Environmental Variables | |
| export H5_DIR=$mydir/hdf5 | |
| export VOL_DIR=$mydir/ | |
| export ABT_DIR=$mydir/argobots | |
| export ASYNC_DIR=$mydir/src | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export LD_LIBRARY_PATH=$VOL_DIR/src:$H5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH | |
| export HDF5_PLUGIN_PATH="$VOL_DIR/src" | |
| export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}" | |
| # Makefile | |
| tail -n 47 Makefile.summit > Makefile | |
| export LD_PRELOAD=$mydir/argobots/lib/libabt.so | |
| make | |
| date | |
| # Run serial and parallel tests | |
| make check | |
| date | |
| # Test with async VOL double buffering | |
| cd ../src | |
| sed -i "s/CFLAGS =/CFLAGS = -DENABLE_WRITE_MEMCPY=1 /g" ./Makefile | |
| cat Makefile | |
| make clean | |
| make | |
| cd ../test | |
| date | |
| make clean | |
| make | |
| make check | |
| date | |
| vol-async-hdf5-develop-Makefile: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Checkout submodule Argobots | |
| uses: actions/[email protected] | |
| with: | |
| submodules: 'true' | |
| - name: Checkout HDF5 latest | |
| uses: actions/[email protected] | |
| with: | |
| repository: HDFGroup/hdf5 | |
| path: hdf5 | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 | |
| - name: Installation | |
| run: | | |
| mydir="$PWD" | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export ABT_DIR=$mydir/argobots | |
| export VOL_DIR=$mydir | |
| mkdir $HDF5_DIR | |
| # Compile HDF5 | |
| cd hdf5 | |
| export HDF5_LIBTOOL=/usr/bin/libtoolize | |
| ./autogen.sh | |
| ./configure --prefix=$HDF5_DIR --enable-parallel --enable-threadsafe --enable-unsupported \ | |
| --disable-tests --disable-hl --disable-fortran --disable-tools | |
| make && make install | |
| # Compile Argobots | |
| cd $ABT_DIR | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make && make install | |
| # Compile Asynchronous VOL connector | |
| cd $VOL_DIR/src | |
| tail -n 48 Makefile.summit > Makefile | |
| make | |
| - name: Compile and Test Vol-Async | |
| run: | | |
| # Compile vol-async tests | |
| mydir="$PWD" | |
| cd $mydir | |
| cd test | |
| # Set Environmental Variables | |
| export H5_DIR=$mydir/hdf5 | |
| export VOL_DIR=$mydir/ | |
| export ABT_DIR=$mydir/argobots | |
| export ASYNC_DIR=$mydir/src | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export LD_LIBRARY_PATH=$VOL_DIR/src:$H5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH | |
| export HDF5_PLUGIN_PATH="$VOL_DIR/src" | |
| export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}" | |
| # Makefile | |
| tail -n 47 Makefile.summit > Makefile | |
| export LD_PRELOAD=$mydir/argobots/lib/libabt.so | |
| make | |
| date | |
| # Run serial and parallel tests | |
| make check | |
| date | |
| # Test with async VOL double buffering | |
| cd ../src | |
| sed -i "s/CFLAGS =/CFLAGS = -DENABLE_WRITE_MEMCPY=1 /g" ./Makefile | |
| cat Makefile | |
| make clean | |
| make | |
| cd ../test | |
| date | |
| make clean | |
| make | |
| make check | |
| date | |
| vol-async-hdf5-latest-cmake: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Checkout submodule Argobots | |
| uses: actions/[email protected] | |
| with: | |
| submodules: 'true' | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 cmake | |
| - name: Checkout latest HDF5 release | |
| run: | | |
| wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz | |
| tar xzf hdf5.tar.gz | |
| ln -sf hdf5-* hdf5 | |
| - name: Installation | |
| run: | | |
| mydir="$PWD" | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export ABT_DIR=$mydir/argobots | |
| export VOL_DIR=$mydir/vol-async/install | |
| mkdir $HDF5_DIR | |
| # Compile HDF5 | |
| cd hdf5 | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=$HDF5_DIR -DHDF5_ENABLE_PARALLEL=ON -DHDF5_ENABLE_THREADSAFE=ON \ | |
| -DALLOW_UNSUPPORTED=ON -DBUILD_TESTING=OFF -DHDF5_BUILD_HL_LIB=OFF \ | |
| -DHDF5_BUILD_EXAMPLES=OFF -DHDF5_BUILD_FORTRAN=OFF -DCMAKE_C_COMPILER=mpicc .. | |
| make -j && make install | |
| # Compile Argobots | |
| cd $ABT_DIR | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make && make install | |
| # Compile Asynchronous VOL connector | |
| pwd | |
| cd ../ | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc .. | |
| make && make install | |
| - name: Compile and Test Vol-Async | |
| run: | | |
| # Compile vol-async tests | |
| mydir="$PWD" | |
| echo $PWD | |
| cd build | |
| # Set Environmental Variables | |
| export VOL_DIR=$mydir/vol-async/install | |
| export ABT_DIR=$mydir/argobots | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export LD_LIBRARY_PATH=$VOL_DIR/lib:$HDF5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH | |
| export HDF5_PLUGIN_PATH="$VOL_DIR/lib" | |
| export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}" | |
| export LD_PRELOAD=$mydir/argobots/lib/libabt.so | |
| # Run serial and parallel tests | |
| date | |
| ctest -V | |
| date | |
| # Test with async VOL write memcopy (double buffering) | |
| cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc -DENABLE_WRITE_MEMCPY=ON .. | |
| make clean | |
| make && make install | |
| date | |
| ctest -V | |
| date | |
| vol-async-hdf5-develop-cmake: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Checkout submodule Argobots | |
| uses: actions/[email protected] | |
| with: | |
| submodules: 'true' | |
| - name: Checkout HDF5 latest | |
| uses: actions/[email protected] | |
| with: | |
| repository: HDFGroup/hdf5 | |
| path: hdf5 | |
| - name: Dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 cmake | |
| - name: Installation | |
| run: | | |
| mydir="$PWD" | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export ABT_DIR=$mydir/argobots | |
| export VOL_DIR=$mydir/vol-async/install | |
| mkdir $HDF5_DIR | |
| # Compile HDF5 | |
| cd hdf5 | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=$HDF5_DIR -DHDF5_ENABLE_PARALLEL=ON -DHDF5_ENABLE_THREADSAFE=ON \ | |
| -DALLOW_UNSUPPORTED=ON -DBUILD_TESTING=OFF -DHDF5_BUILD_HL_LIB=OFF \ | |
| -DHDF5_BUILD_EXAMPLES=OFF -DHDF5_BUILD_FORTRAN=OFF -DCMAKE_C_COMPILER=mpicc .. | |
| make -j && make install | |
| # Compile Argobots | |
| cd $ABT_DIR | |
| ./autogen.sh | |
| ./configure --prefix=$ABT_DIR | |
| make && make install | |
| # Compile Asynchronous VOL connector | |
| pwd | |
| cd ../ | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc .. | |
| make && make install | |
| - name: Compile and Test Vol-Async | |
| run: | | |
| # Compile vol-async tests | |
| mydir="$PWD" | |
| echo $PWD | |
| cd build | |
| # Set Environmental Variables | |
| export VOL_DIR=$mydir/vol-async/install | |
| export ABT_DIR=$mydir/argobots | |
| export HDF5_DIR=$mydir/hdf5/install | |
| export LD_LIBRARY_PATH=$VOL_DIR/lib:$HDF5_DIR/install/lib:$ABT_DIR/lib:$LD_LIBRARY_PATH | |
| export HDF5_PLUGIN_PATH="$VOL_DIR/lib" | |
| export HDF5_VOL_CONNECTOR="async under_vol=0;under_info={}" | |
| export LD_PRELOAD=$mydir/argobots/lib/libabt.so | |
| # Run serial and parallel tests | |
| date | |
| ctest -V | |
| date | |
| # Test with async VOL write memcopy (double buffering) | |
| cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc -DENABLE_WRITE_MEMCPY=ON .. | |
| make clean | |
| make && make install | |
| date | |
| ctest -V | |
| date | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 |