GitHub - HMP1/bumps: Bayesian uncertainty modeling for parametric systems

This branch is 1489 commits behind bumps/bumps:master.

Name	Name	Last commit message	Last commit date
Latest commit Paul Kienzle add entropy calculator Jun 30, 2014 340abe2 · Jun 30, 2014 History 204 Commits
bin	bin	allow PyInstaller build on mac	Dec 16, 2013
bumps	bumps	add entropy calculator	Jun 30, 2014
doc	doc	add entropy calculator	Jun 30, 2014
extra	extra	code cleanup; doc updates	May 13, 2014
.gitignore	.gitignore	doc cleanup; better handling of examples; fix tests	Dec 12, 2013
LICENSE.txt	LICENSE.txt	indicate licenses for major subcomponents in the common license file	Jan 13, 2014
MANIFEST.in	MANIFEST.in	build updates	Jan 25, 2013
README.txt	README.txt	clean up DE and add stopping conditions	Oct 22, 2013
bumps.iss	bumps.iss	split fitting engine from refl1d	Nov 17, 2011
check_examples.py	check_examples.py	update test infrastructure	Jan 13, 2014
installer.spec	installer.spec	allow PyInstaller build on mac	Dec 16, 2013
master_builder.py	master_builder.py	don't build pyc files automatically	Jan 2, 2014
run.py	run.py	close /dev/null when build process is done	Apr 24, 2014
setup.py	setup.py	allow arbitrary resolution function for convolution	Jun 11, 2014
setup_py2app.py	setup_py2app.py	don't build pyc files automatically	Jan 2, 2014
setup_py2exe.py	setup_py2exe.py	don't build pyc files automatically	Jan 2, 2014
test.py	test.py	BUMPSDATA is for gui assets, not sample data	Mar 25, 2014

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Bumps provides data fitting and Bayesian uncertainty modeling for inverse
problems.  It has a variety of optimization algorithms available for locating
the most like value for function parameters given data, and for exploring
the uncertainty around the minimum.

Installation is with the usual python installation command:

    python setup.py install

This installs the package for all users of the system.  To isolate
the package it is useful to install virtualenv and virtualenv-wrapper.

This allows you to say:

    mkvirtualenv --system-site-packages bumps
    python setup.py develop

Once the system is installed, you can verify that it is working with: 

    bumps doc/examples/peaks/model.py --chisq