Data+ Program
Make sure to set working directory to Data_Plus
Setup variables:
- Run retrieve_and_process_data.R to get:
- data_frames.r (contains df and feat_df)
- saved_data_proc.r
- saved_uqnorm_data.r
- Run make_factors to get saved_sample_factors.r and sample_factors.txt
- Run create_bin_comp_df.r to get saved_bin_comp_dfs.r
- Run create_bin_comp_names.r to get saved_bin_comp_names.r
To run t-tests:
- Run t_tests.R to get saved_p_vals.r and saved_conf_ints_p_vals.r
- Rn p_val_correction.R to get saved_significant_miRNAs.r BUG: ordering of p-values in significant_miRNAs will not work if p value is in scientific notation form (ex. 1.759e-5)