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miRNA_dataPlus

Data+ Program

Make sure to set working directory to Data_Plus

Setup variables:

  1. Run retrieve_and_process_data.R to get:
    • data_frames.r (contains df and feat_df)
    • saved_data_proc.r
    • saved_uqnorm_data.r
  2. Run make_factors to get saved_sample_factors.r and sample_factors.txt
  3. Run create_bin_comp_df.r to get saved_bin_comp_dfs.r
  4. Run create_bin_comp_names.r to get saved_bin_comp_names.r

To run t-tests:

  1. Run t_tests.R to get saved_p_vals.r and saved_conf_ints_p_vals.r
  2. Rn p_val_correction.R to get saved_significant_miRNAs.r BUG: ordering of p-values in significant_miRNAs will not work if p value is in scientific notation form (ex. 1.759e-5)

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