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Introduce md_origin instead of m_manual_deps #5914

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Run time

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Job	Run time
linux-arm64	5m 48s
mac-build (macos-14)	3m 18s
linux-build (4.08.1)	1m 52s
windows64-build	21m 30s
mac-build (macos-13)	5m 28s
linux-build (5.0.0)	1m 21s
test-docgen	2m 40s
linux-test (4.08.1, macro)	4m 47s
linux-test (4.08.1, js)	2m 37s
linux-test (4.08.1, hl)	1m 55s
linux-test (4.08.1, cpp)	8m 53s
linux-test (4.08.1, jvm)	2m 24s
linux-test (4.08.1, php)	1m 13s
linux-test (4.08.1, python)	1m 53s
linux-test (4.08.1, lua)	5m 14s
linux-test (4.08.1, flash)	48s
linux-test (4.08.1, neko)	46s
linux-test (5.0.0, macro)	4m 38s
linux-test (5.0.0, js)	3m 8s
linux-test (5.0.0, hl)	2m 4s
linux-test (5.0.0, cpp)	9m 44s
linux-test (5.0.0, jvm)	2m 6s
linux-test (5.0.0, php)	59s
linux-test (5.0.0, python)	1m 7s
linux-test (5.0.0, lua)	5m 9s
linux-test (5.0.0, flash)	50s
linux-test (5.0.0, neko)	37s
mac-build-universal	24s
mac-test (macro)	6m 15s
mac-test (js)	3m 18s
mac-test (hl)	2m 17s
mac-test (cpp)	18m 14s
mac-test (jvm)	3m 55s
mac-test (php)	1m 46s
mac-test (python)	2m 12s
mac-test (lua)	6m 14s
mac-test (flash)	1m 28s
mac-test (neko)	1m 6s
windows64-test (macro)	6m 53s
windows64-test (js)	4m 18s
windows64-test (hl)	3m 2s
windows64-test (cpp)	6m 3s
windows64-test (jvm)	3m 25s
windows64-test (php)	2m 2s
windows64-test (python)	1m 29s
windows64-test (flash)	2m 40s
windows64-test (neko)	1m 16s
deploy	2m 4s
deploy_apidoc	34s
	3h 3m 44s