IceNine

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Authors: Frankie Li ([email protected])

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Acknowledging IceNine

To cite the code itself:

IceNine, Orientation Reconstruction for Synchrotron X-ray Data, https://github.com/FrankieLi/IceNine or the bibentry:

citation.bib

To cite the algorithm:

S. F. Li, and R. M. Suter, Adaptive reconstruction method for three-dimensional orientation imaging, Journal of Applied Crystallography, 2013.

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Requirements:

XDM++ Boost 1.43 gcc >= 4.2

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Descriptions:

-This is a forward model reconstruction code that implements [1]. Detailed reconstruction characteristics can be found in [1].

-Note that IceNine requires XDM++, which is a library developed in Carnegie Mellon University during S. F. Li's PhD Thesis. This library hosted by Carnegie Mellon University on GitHub.

-Because of lagacy reasons, file formats are currently limited to *.mic for output and *.bin and *.txt for input. This will hopefully change in the forthcoming releases.

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Content:

Both XDM++ and Boost must be acquired separately and are not part of this distribution.

Src/ Source code for VPFFT -- Driver.cpp -- main driver for the IceNine application -- SearchTrait.h -- definition of an orientation search -- DiscreteAdaptive.h -- implementation of the adpative orientation search method.

ConfigFiles/ Example configuration files and detector files.

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References

[1] S. F. Li, and R. M. Suter, Adaptive reconstruction method for three-dimensional orientation imaging, Journal of Applied Crystallography, 2013.