[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -2,41 +2,41 @@ ci:
   autoupdate_schedule: 'quarterly'
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.6.0
     hooks:
       - id: check-docstring-first
       - id: end-of-file-fixer
       - id: trailing-whitespace
       - id: mixed-line-ending
       - id: check-merge-conflict
   - repo: https://github.com/asottile/setup-cfg-fmt
-    rev: v1.17.0
+    rev: v2.5.0
     hooks:
       - id: setup-cfg-fmt
   - repo: https://github.com/PyCQA/flake8
-    rev: 3.9.2
+    rev: 7.1.0
     hooks:
       - id: flake8
         additional_dependencies: [flake8-typing-imports==1.7.0]
-  - repo: https://github.com/myint/autoflake
-    rev: v1.4
+  - repo: https://github.com/PyCQA/autoflake
+    rev: v2.3.1
     hooks:
       - id: autoflake
         args: ["--in-place", "--remove-all-unused-imports", "--ignore-init-module-imports", "--remove-unused-variables"]
   - repo: https://github.com/PyCQA/isort
-    rev: 5.8.0
+    rev: 5.13.2
     hooks:
       - id: isort
   - repo: https://github.com/psf/black
-    rev: 21.5b2
+    rev: 24.4.2
     hooks:
       - id: black
   - repo: https://github.com/asottile/pyupgrade
-    rev: v2.19.0
+    rev: v3.16.0
     hooks:
       - id: pyupgrade
         args: [--py37-plus]
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v0.812
+    rev: v1.10.1
     hooks:
       - id: mypy

setup.cfg

@@ -7,7 +7,7 @@ url = https://github.com/Hekstra-Lab/yeast-mcrnn
 author = Ian Hunt-Isaak, John Russell
 author_email = [email protected], [email protected]
 license = MIT
-license_file = LICENSE
+license_files = LICENSE
 platforms = Linux, Mac OS X, Windows
 classifiers =
     Intended Audience :: Developers
@@ -16,10 +16,6 @@ classifiers =
     Programming Language :: Python
     Programming Language :: Python :: 3
     Programming Language :: Python :: 3 :: Only
-    Programming Language :: Python :: 3.6
-    Programming Language :: Python :: 3.7
-    Programming Language :: Python :: 3.8
-    Programming Language :: Python :: 3.9
     Programming Language :: Python :: Implementation :: CPython
 
 [options]
@@ -29,10 +25,10 @@ install_requires =
     fast-overlap
     numpy
     pandas
-    read_roi
+    read-roi
     tifffile
     torch
-python_requires = >=3.6
+python_requires = >=3.8
 
 [options.extras_require]
 test =

yeast_mrcnn/model.py

@@ -33,7 +33,7 @@ def mrcnn():
     )
 
     # Make anchor generator with 3 sizes per feature map and 5 aspect ratios
-    sizes = tuple(2.0 ** x for x in range(5, 12))
+    sizes = tuple(2.0**x for x in range(5, 12))
     aspects = tuple(0.5 * x for x in range(1, 5))
     n_feature_maps = 5  # true for resnet50 with FPN
     ag_sizes = tuple(tuple(sizes[i : i + 3]) for i in range(n_feature_maps))