Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bwa 0.7.18 #169815

Merged
merged 2 commits into from
Apr 23, 2024
Merged

bwa 0.7.18 #169815

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
4374bc3
bwa 0.7.18
chenrui333 Apr 23, 2024
2873261
bwa: update 0.7.18 bottle.
BrewTestBot Apr 23, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions .github/autobump.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -216,6 +216,7 @@ bup
bupstash
busted
butane
bwa
byacc
byobu
byteman
Expand Down
30 changes: 10 additions & 20 deletions Formula/b/bwa.rb
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,26 +1,19 @@
class Bwa < Formula
desc "Burrow-Wheeler Aligner for pairwise alignment of DNA"
homepage "https://github.com/lh3/bwa"
url "https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2"
sha256 "de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd"
license "GPL-3.0"
url "https://github.com/lh3/bwa/archive/refs/tags/v0.7.18.tar.gz"
sha256 "194788087f7b9a77c0114aa481b2ef21439f6abab72488c83917302e8d0e7870"
license all_of: ["GPL-3.0-or-later", "MIT"]
head "https://github.com/lh3/bwa.git", branch: "master"

bottle do
sha256 cellar: :any_skip_relocation, arm64_sonoma: "8a3ccdfdc0f75dbe5efff72c4d12d933a22659e5973431cc4186f655615eb173"
sha256 cellar: :any_skip_relocation, arm64_ventura: "16f68f7c570fdc002ad5a75ddb23a7b4cf6c7993ff09b3e7aa39683e3f32b5b5"
sha256 cellar: :any_skip_relocation, arm64_monterey: "c21d941893a927b1f362fb0f44d809cc81b5d4ec59f4073b5f39d081902f321b"
sha256 cellar: :any_skip_relocation, arm64_big_sur: "4340d5a65a5c146033ea20710f9489ef2fe2a3b2c85937f3e71da141c44d4658"
sha256 cellar: :any_skip_relocation, sonoma: "fc42f96cf406cb2f0c4535688c11aff1eb7d5d2c7099fc67b7fba1947a5c695f"
sha256 cellar: :any_skip_relocation, ventura: "70436d404c59f546c96157cfd4329980d51413346f2383ce96d9dcb5dbc6885b"
sha256 cellar: :any_skip_relocation, monterey: "815da042557c670364ad899e1257f51c893979436beb1c016c8fdb6ad9ef734a"
sha256 cellar: :any_skip_relocation, big_sur: "d67267aeea4145fef5e65fe1c8d9f9b34121c0339badf703811027db2570967a"
sha256 cellar: :any_skip_relocation, catalina: "59b821b80f729fef923c3edb048478836c72d6aea34b245d1b292b2c3f893432"
sha256 cellar: :any_skip_relocation, mojave: "6b07cef5ea1955d8a83e7b59ef8458a7604998f735f0eab85889fa3aedc7e953"
sha256 cellar: :any_skip_relocation, high_sierra: "02da3eecd6569c193a55436f705c8d351d052e44b79a43d6afc50f7308603a73"
sha256 cellar: :any_skip_relocation, sierra: "4db97125930b495fc34b6d161bea57171ac4bf2a5bf48ca1088a69a594874710"
sha256 cellar: :any_skip_relocation, el_capitan: "bee09d138e9d8f45c12d6c99b48a3e6891b6e4d3f5c6a6847bfeaa28afc2f362"
sha256 cellar: :any_skip_relocation, x86_64_linux: "3d875f0b64143cfb58e44681e47102158b46e0004c408d8fc5f10dc976383a94"
sha256 cellar: :any_skip_relocation, arm64_sonoma: "0f6b87e89a46108e9c8f92ea8ceaf747ba0e8b759c685c0a0f9379e3f9733768"
sha256 cellar: :any_skip_relocation, arm64_ventura: "4ab4ac87cfd87c58980d86cd85ddbb254e8b3e283148f3589efe7e9f4fa58ac7"
sha256 cellar: :any_skip_relocation, arm64_monterey: "0a187c420db866dc844ea6f712656b4e4c86bc3640289ac63e71c3b2cbb90a4e"
sha256 cellar: :any_skip_relocation, sonoma: "55d0c3fa4de82095c0421c6962a0720c5830fa9402c257342837a0e473c395ac"
sha256 cellar: :any_skip_relocation, ventura: "2c4ee46e300f7fb8b39728c4569697319641f90cfd87391cafc14a65c7dcbeb6"
sha256 cellar: :any_skip_relocation, monterey: "b035ce4068ab880f243402289cb17cf5b165b7d3eb209385bf32c31d6e1d815d"
sha256 cellar: :any_skip_relocation, x86_64_linux: "9307f2d732feb2083c8a8347a972d4c335b6815fd4c4b7813e1e913f9724049c"
end

uses_from_macos "zlib"
Expand All @@ -30,9 +23,6 @@ class Bwa < Formula
end

def install
# PR ref: https://github.com/lh3/bwa/pull/344
inreplace "ksw.c", "<emmintrin.h>", "<sse2neon.h>" if Hardware::CPU.arm?

system "make"

# "make install" requested 26 Dec 2017 https://github.com/lh3/bwa/issues/172
Expand Down
Loading