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@HopkinsIDD

Infectious Disease Dynamics Group at Johns Hopkins University

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  1. COVIDScenarioPipeline COVIDScenarioPipeline Public

    Public shared code for doing scenario forecasting and creating reports for various governmental entities.

    HTML 104 47

  2. ncov_incubation ncov_incubation Public

    Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools

    57 21

  3. covidRTPCR covidRTPCR Public

    Analysis of RT-PCR sensitivity by day since exposure or symptom onset

    Stan 24 11

  4. hit-covid hit-covid Public

    Data and Codebook for the HIT-COVID Project

    21 7

  5. nCoV-Sandbox nCoV-Sandbox Public

    HTML 16 4

  6. ForecastFramework ForecastFramework Public

    Create modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separately, and swap out particular models as desired. Create mode…

    R 12 4

Repositories

Showing 10 of 92 repositories
  • flepiMoP Public

    The Flexible Epidemic Modeling Pipeline

    HopkinsIDD/flepiMoP’s past year of commit activity
    HTML 7 GPL-3.0 3 97 (1 issue needs help) 5 Updated Jul 14, 2024
  • rsv-forecast-hub Public

    RSV Scenario Modeling Hub for forecasting

    HopkinsIDD/rsv-forecast-hub’s past year of commit activity
    R 2 MIT 8 2 0 Updated Jul 12, 2024
  • HopkinsIDD/ForecastHospBurden’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 12, 2024
  • RubellaR0 Public

    Estimating the R0 for rubella from global serological data

    HopkinsIDD/RubellaR0’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 12, 2024
  • gavi_vimc_cholera Public

    VIMC cholera model - estimating impact of oral cholera vaccine

    HopkinsIDD/gavi_vimc_cholera’s past year of commit activity
    HTML 1 0 26 1 Updated Jul 11, 2024
  • cholera-mapping-pipeline Public

    Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure

    HopkinsIDD/cholera-mapping-pipeline’s past year of commit activity
    R 1 3 122 10 Updated Jul 10, 2024
  • HopkinsIDD/flepimop_sample’s past year of commit activity
    HTML 1 4 0 0 Updated Jul 9, 2024
  • rsv-forecast-hub_website Public

    RSV Forcast Hub website repo

    HopkinsIDD/rsv-forecast-hub_website’s past year of commit activity
    HTML 0 1 1 0 Updated Jul 6, 2024
  • nepal_hev Public

    Public code used to map the predicted seroprevalence of hepatitis E virus across Nepal in 2021.

    HopkinsIDD/nepal_hev’s past year of commit activity
    R 0 0 0 0 Updated Jun 26, 2024
  • flepimop-documentation Public

    Documentation for JHU-IDD's Flexible Epidemic Modeling Pipeline. Updated through gitbook.com. Browse it on https://iddynamics.gitbook.io/flepimop/

    HopkinsIDD/flepimop-documentation’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Jun 4, 2024

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