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[Bug]: The environment.yml File Formatting #485

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TimothyWillard opened this issue Jan 24, 2025 · 0 comments
Open

[Bug]: The environment.yml File Formatting #485

TimothyWillard opened this issue Jan 24, 2025 · 0 comments
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bug Defects or errors in the code. dependency For issues with package dependencies. installation Relating to installation / upgrade / migration. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. quick issue Short or easy fix.

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@TimothyWillard
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TimothyWillard commented Jan 24, 2025

Label

bug, dependency, installation, meta/workflow, quick issue

Priority Label

low priority

Describe the bug/issue

The environment.yml file specifying the conda environment to create produced by build/create_environment_yml.R script is oddly formatted YAML. Note that the list items are not indented. Not a major issue since conda still parses the file correctly, but the file can look a bit off when viewing it in an editor.

To Reproduce

Run the build/create_environment_yml.R script script and inspect the resulting environment.yml file for incorrectly spaced list items like so:

channels:
- conda-forge
- defaults
- r
- dnachun

Environment, if relevant

MacOS 15.2, Python 3.11.11, R 4.3.3, Conda 24.5.0, Commit 6f1f1cb

@TimothyWillard TimothyWillard added bug Defects or errors in the code. dependency For issues with package dependencies. installation Relating to installation / upgrade / migration. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. quick issue Short or easy fix. labels Jan 24, 2025
@TimothyWillard TimothyWillard changed the title [Bug]: The environment.yml File Is Syntactically Incorrect [Bug]: The environment.yml File Formatting Jan 24, 2025
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Labels
bug Defects or errors in the code. dependency For issues with package dependencies. installation Relating to installation / upgrade / migration. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. quick issue Short or easy fix.
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