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1. COPILOT COPILOT Public

   Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.

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2. scKB scKB Public

   Use kallisto and bustools to call the gene-cell matrix for both spliced and unspliced transcripts of scRNA-seq

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3. bindSC bindSC Public

   Forked from KChen-lab/bindSC

   Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

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