clean up redundant mito assembly formats

HullUni-bioinformatics · Mar 15, 2017 · 036d2a3 · 036d2a3
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diff --git a/...eHarA-NC_026554.1_assembly/MareHarA-NC_026554.1_d_results/MareHarA-NC_026554.1_out.caf.gz b/...eHarA-NC_026554.1_assembly/MareHarA-NC_026554.1_d_results/MareHarA-NC_026554.1_out.caf.gz
diff --git a/...eHarA-NC_026554.1_assembly/MareHarA-NC_026554.1_d_results/MareHarA-NC_026554.1_out.maf.gz b/...eHarA-NC_026554.1_assembly/MareHarA-NC_026554.1_d_results/MareHarA-NC_026554.1_out.maf.gz
diff --git a/...eHarA-NC_026554.1_assembly/MareHarA-NC_026554.1_d_results/MareHarA-NC_026554.1_out.wig.gz b/...eHarA-NC_026554.1_assembly/MareHarA-NC_026554.1_d_results/MareHarA-NC_026554.1_out.wig.gz
diff --git a/...MareL28-NC_026554.1_assembly/MareL28-NC_026554.1_d_results/MareL28-NC_026554.1_out.caf.gz b/...MareL28-NC_026554.1_assembly/MareL28-NC_026554.1_d_results/MareL28-NC_026554.1_out.caf.gz
diff --git a/...MareL28-NC_026554.1_assembly/MareL28-NC_026554.1_d_results/MareL28-NC_026554.1_out.maf.gz b/...MareL28-NC_026554.1_assembly/MareL28-NC_026554.1_d_results/MareL28-NC_026554.1_out.maf.gz
diff --git a/...MareL28-NC_026554.1_assembly/MareL28-NC_026554.1_d_results/MareL28-NC_026554.1_out.wig.gz b/...MareL28-NC_026554.1_assembly/MareL28-NC_026554.1_d_results/MareL28-NC_026554.1_out.wig.gz
diff --git a/...MareL32-NC_026554.1_assembly/MareL32-NC_026554.1_d_results/MareL32-NC_026554.1_out.caf.gz b/...MareL32-NC_026554.1_assembly/MareL32-NC_026554.1_d_results/MareL32-NC_026554.1_out.caf.gz
diff --git a/...MareL32-NC_026554.1_assembly/MareL32-NC_026554.1_d_results/MareL32-NC_026554.1_out.maf.gz b/...MareL32-NC_026554.1_assembly/MareL32-NC_026554.1_d_results/MareL32-NC_026554.1_out.maf.gz
diff --git a/...MareL32-NC_026554.1_assembly/MareL32-NC_026554.1_d_results/MareL32-NC_026554.1_out.wig.gz b/...MareL32-NC_026554.1_assembly/MareL32-NC_026554.1_d_results/MareL32-NC_026554.1_out.wig.gz
diff --git a/...MentL30-NC_024097.1_assembly/MentL30-NC_024097.1_d_results/MentL30-NC_024097.1_out.caf.gz b/...MentL30-NC_024097.1_assembly/MentL30-NC_024097.1_d_results/MentL30-NC_024097.1_out.caf.gz
diff --git a/...MentL30-NC_024097.1_assembly/MentL30-NC_024097.1_d_results/MentL30-NC_024097.1_out.maf.gz b/...MentL30-NC_024097.1_assembly/MentL30-NC_024097.1_d_results/MentL30-NC_024097.1_out.maf.gz
diff --git a/...MentL30-NC_024097.1_assembly/MentL30-NC_024097.1_d_results/MentL30-NC_024097.1_out.wig.gz b/...MentL30-NC_024097.1_assembly/MentL30-NC_024097.1_d_results/MentL30-NC_024097.1_out.wig.gz
diff --git a/...MfloJB5-NC_024097.1_assembly/MfloJB5-NC_024097.1_d_results/MfloJB5-NC_024097.1_out.caf.gz b/...MfloJB5-NC_024097.1_assembly/MfloJB5-NC_024097.1_d_results/MfloJB5-NC_024097.1_out.caf.gz
diff --git a/...MfloJB5-NC_024097.1_assembly/MfloJB5-NC_024097.1_d_results/MfloJB5-NC_024097.1_out.maf.gz b/...MfloJB5-NC_024097.1_assembly/MfloJB5-NC_024097.1_d_results/MfloJB5-NC_024097.1_out.maf.gz
diff --git a/...MfloJB5-NC_024097.1_assembly/MfloJB5-NC_024097.1_d_results/MfloJB5-NC_024097.1_out.wig.gz b/...MfloJB5-NC_024097.1_assembly/MfloJB5-NC_024097.1_d_results/MfloJB5-NC_024097.1_out.wig.gz
diff --git a/...oSJF1-NC_024097.1_assembly/MfloSJF1-NC_024097.1_d_results/MfloSJF1-NC_024097.1_out.caf.gz b/...oSJF1-NC_024097.1_assembly/MfloSJF1-NC_024097.1_d_results/MfloSJF1-NC_024097.1_out.caf.gz
diff --git a/...oSJF1-NC_024097.1_assembly/MfloSJF1-NC_024097.1_d_results/MfloSJF1-NC_024097.1_out.maf.gz b/...oSJF1-NC_024097.1_assembly/MfloSJF1-NC_024097.1_d_results/MfloSJF1-NC_024097.1_out.maf.gz
diff --git a/...oSJF1-NC_024097.1_assembly/MfloSJF1-NC_024097.1_d_results/MfloSJF1-NC_024097.1_out.wig.gz b/...oSJF1-NC_024097.1_assembly/MfloSJF1-NC_024097.1_d_results/MfloSJF1-NC_024097.1_out.wig.gz
diff --git a/...c557R-NC_024097.1_assembly/Minc557R-NC_024097.1_d_results/Minc557R-NC_024097.1_out.caf.gz b/...c557R-NC_024097.1_assembly/Minc557R-NC_024097.1_d_results/Minc557R-NC_024097.1_out.caf.gz
diff --git a/...c557R-NC_024097.1_assembly/Minc557R-NC_024097.1_d_results/Minc557R-NC_024097.1_out.maf.gz b/...c557R-NC_024097.1_assembly/Minc557R-NC_024097.1_d_results/Minc557R-NC_024097.1_out.maf.gz
diff --git a/...c557R-NC_024097.1_assembly/Minc557R-NC_024097.1_d_results/Minc557R-NC_024097.1_out.wig.gz b/...c557R-NC_024097.1_assembly/Minc557R-NC_024097.1_d_results/Minc557R-NC_024097.1_out.wig.gz
diff --git a/...MincA14-NC_024097.1_assembly/MincA14-NC_024097.1_d_results/MincA14-NC_024097.1_out.caf.gz b/...MincA14-NC_024097.1_assembly/MincA14-NC_024097.1_d_results/MincA14-NC_024097.1_out.caf.gz
diff --git a/...MincA14-NC_024097.1_assembly/MincA14-NC_024097.1_d_results/MincA14-NC_024097.1_out.maf.gz b/...MincA14-NC_024097.1_assembly/MincA14-NC_024097.1_d_results/MincA14-NC_024097.1_out.maf.gz
diff --git a/...MincA14-NC_024097.1_assembly/MincA14-NC_024097.1_d_results/MincA14-NC_024097.1_out.wig.gz b/...MincA14-NC_024097.1_assembly/MincA14-NC_024097.1_d_results/MincA14-NC_024097.1_out.wig.gz
diff --git a/...cHarC-NC_024097.1_assembly/MincHarC-NC_024097.1_d_results/MincHarC-NC_024097.1_out.caf.gz b/...cHarC-NC_024097.1_assembly/MincHarC-NC_024097.1_d_results/MincHarC-NC_024097.1_out.caf.gz
diff --git a/...cHarC-NC_024097.1_assembly/MincHarC-NC_024097.1_d_results/MincHarC-NC_024097.1_out.maf.gz b/...cHarC-NC_024097.1_assembly/MincHarC-NC_024097.1_d_results/MincHarC-NC_024097.1_out.maf.gz
diff --git a/...cHarC-NC_024097.1_assembly/MincHarC-NC_024097.1_d_results/MincHarC-NC_024097.1_out.wig.gz b/...cHarC-NC_024097.1_assembly/MincHarC-NC_024097.1_d_results/MincHarC-NC_024097.1_out.wig.gz
diff --git a/...MincL19-NC_024097.1_assembly/MincL19-NC_024097.1_d_results/MincL19-NC_024097.1_out.caf.gz b/...MincL19-NC_024097.1_assembly/MincL19-NC_024097.1_d_results/MincL19-NC_024097.1_out.caf.gz
diff --git a/...MincL19-NC_024097.1_assembly/MincL19-NC_024097.1_d_results/MincL19-NC_024097.1_out.maf.gz b/...MincL19-NC_024097.1_assembly/MincL19-NC_024097.1_d_results/MincL19-NC_024097.1_out.maf.gz
diff --git a/...MincL19-NC_024097.1_assembly/MincL19-NC_024097.1_d_results/MincL19-NC_024097.1_out.wig.gz b/...MincL19-NC_024097.1_assembly/MincL19-NC_024097.1_d_results/MincL19-NC_024097.1_out.wig.gz
diff --git a/...MincL27-NC_024097.1_assembly/MincL27-NC_024097.1_d_results/MincL27-NC_024097.1_out.caf.gz b/...MincL27-NC_024097.1_assembly/MincL27-NC_024097.1_d_results/MincL27-NC_024097.1_out.caf.gz
diff --git a/...MincL27-NC_024097.1_assembly/MincL27-NC_024097.1_d_results/MincL27-NC_024097.1_out.maf.gz b/...MincL27-NC_024097.1_assembly/MincL27-NC_024097.1_d_results/MincL27-NC_024097.1_out.maf.gz
diff --git a/...MincL27-NC_024097.1_assembly/MincL27-NC_024097.1_d_results/MincL27-NC_024097.1_out.wig.gz b/...MincL27-NC_024097.1_assembly/MincL27-NC_024097.1_d_results/MincL27-NC_024097.1_out.wig.gz
diff --git a/...n3/MincL9-NC_024097.1_assembly/MincL9-NC_024097.1_d_results/MincL9-NC_024097.1_out.caf.gz b/...n3/MincL9-NC_024097.1_assembly/MincL9-NC_024097.1_d_results/MincL9-NC_024097.1_out.caf.gz
diff --git a/...n3/MincL9-NC_024097.1_assembly/MincL9-NC_024097.1_d_results/MincL9-NC_024097.1_out.maf.gz b/...n3/MincL9-NC_024097.1_assembly/MincL9-NC_024097.1_d_results/MincL9-NC_024097.1_out.maf.gz
diff --git a/...n3/MincL9-NC_024097.1_assembly/MincL9-NC_024097.1_d_results/MincL9-NC_024097.1_out.wig.gz b/...n3/MincL9-NC_024097.1_assembly/MincL9-NC_024097.1_d_results/MincL9-NC_024097.1_out.wig.gz
diff --git a/...MincVW6-NC_024097.1_assembly/MincVW6-NC_024097.1_d_results/MincVW6-NC_024097.1_out.caf.gz b/...MincVW6-NC_024097.1_assembly/MincVW6-NC_024097.1_d_results/MincVW6-NC_024097.1_out.caf.gz
diff --git a/...MincVW6-NC_024097.1_assembly/MincVW6-NC_024097.1_d_results/MincVW6-NC_024097.1_out.maf.gz b/...MincVW6-NC_024097.1_assembly/MincVW6-NC_024097.1_d_results/MincVW6-NC_024097.1_out.maf.gz
diff --git a/...MincVW6-NC_024097.1_assembly/MincVW6-NC_024097.1_d_results/MincVW6-NC_024097.1_out.wig.gz b/...MincVW6-NC_024097.1_assembly/MincVW6-NC_024097.1_d_results/MincVW6-NC_024097.1_out.wig.gz
diff --git a/...22/MincW1-NC_024097.1_assembly/MincW1-NC_024097.1_d_results/MincW1-NC_024097.1_out.caf.gz b/...22/MincW1-NC_024097.1_assembly/MincW1-NC_024097.1_d_results/MincW1-NC_024097.1_out.caf.gz
diff --git a/...22/MincW1-NC_024097.1_assembly/MincW1-NC_024097.1_d_results/MincW1-NC_024097.1_out.maf.gz b/...22/MincW1-NC_024097.1_assembly/MincW1-NC_024097.1_d_results/MincW1-NC_024097.1_out.maf.gz
diff --git a/...22/MincW1-NC_024097.1_assembly/MincW1-NC_024097.1_d_results/MincW1-NC_024097.1_out.wig.gz b/...22/MincW1-NC_024097.1_assembly/MincW1-NC_024097.1_d_results/MincW1-NC_024097.1_out.wig.gz
diff --git a/...MjavL57-NC_026556.1_assembly/MjavL57-NC_026556.1_d_results/MjavL57-NC_026556.1_out.caf.gz b/...MjavL57-NC_026556.1_assembly/MjavL57-NC_026556.1_d_results/MjavL57-NC_026556.1_out.caf.gz
diff --git a/...MjavL57-NC_026556.1_assembly/MjavL57-NC_026556.1_d_results/MjavL57-NC_026556.1_out.maf.gz b/...MjavL57-NC_026556.1_assembly/MjavL57-NC_026556.1_d_results/MjavL57-NC_026556.1_out.maf.gz
diff --git a/...MjavL57-NC_026556.1_assembly/MjavL57-NC_026556.1_d_results/MjavL57-NC_026556.1_out.wig.gz b/...MjavL57-NC_026556.1_assembly/MjavL57-NC_026556.1_d_results/MjavL57-NC_026556.1_out.wig.gz
diff --git a/...vLD15-NC_026556.1_assembly/MjavLD15-NC_026556.1_d_results/MjavLD15-NC_026556.1_out.caf.gz b/...vLD15-NC_026556.1_assembly/MjavLD15-NC_026556.1_d_results/MjavLD15-NC_026556.1_out.caf.gz
diff --git a/...vLD15-NC_026556.1_assembly/MjavLD15-NC_026556.1_d_results/MjavLD15-NC_026556.1_out.maf.gz b/...vLD15-NC_026556.1_assembly/MjavLD15-NC_026556.1_d_results/MjavLD15-NC_026556.1_out.maf.gz
diff --git a/...vLD15-NC_026556.1_assembly/MjavLD15-NC_026556.1_d_results/MjavLD15-NC_026556.1_out.wig.gz b/...vLD15-NC_026556.1_assembly/MjavLD15-NC_026556.1_d_results/MjavLD15-NC_026556.1_out.wig.gz
diff --git a/...vLD17-NC_026556.1_assembly/MjavLD17-NC_026556.1_d_results/MjavLD17-NC_026556.1_out.caf.gz b/...vLD17-NC_026556.1_assembly/MjavLD17-NC_026556.1_d_results/MjavLD17-NC_026556.1_out.caf.gz
diff --git a/...vLD17-NC_026556.1_assembly/MjavLD17-NC_026556.1_d_results/MjavLD17-NC_026556.1_out.maf.gz b/...vLD17-NC_026556.1_assembly/MjavLD17-NC_026556.1_d_results/MjavLD17-NC_026556.1_out.maf.gz
diff --git a/...vLD17-NC_026556.1_assembly/MjavLD17-NC_026556.1_d_results/MjavLD17-NC_026556.1_out.wig.gz b/...vLD17-NC_026556.1_assembly/MjavLD17-NC_026556.1_d_results/MjavLD17-NC_026556.1_out.wig.gz
diff --git a/...MjavVW4-NC_026556.1_assembly/MjavVW4-NC_026556.1_d_results/MjavVW4-NC_026556.1_out.caf.gz b/...MjavVW4-NC_026556.1_assembly/MjavVW4-NC_026556.1_d_results/MjavVW4-NC_026556.1_out.caf.gz
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diff --git a/...MjavVW4-NC_026556.1_assembly/MjavVW4-NC_026556.1_d_results/MjavVW4-NC_026556.1_out.wig.gz b/...MjavVW4-NC_026556.1_assembly/MjavVW4-NC_026556.1_d_results/MjavVW4-NC_026556.1_out.wig.gz
diff --git a/...MjavVW5-NC_026556.1_assembly/MjavVW5-NC_026556.1_d_results/MjavVW5-NC_026556.1_out.caf.gz b/...MjavVW5-NC_026556.1_assembly/MjavVW5-NC_026556.1_d_results/MjavVW5-NC_026556.1_out.caf.gz
diff --git a/...MjavVW5-NC_026556.1_assembly/MjavVW5-NC_026556.1_d_results/MjavVW5-NC_026556.1_out.maf.gz b/...MjavVW5-NC_026556.1_assembly/MjavVW5-NC_026556.1_d_results/MjavVW5-NC_026556.1_out.maf.gz
diff --git a/...MjavVW5-NC_026556.1_assembly/MjavVW5-NC_026556.1_d_results/MjavVW5-NC_026556.1_out.wig.gz b/...MjavVW5-NC_026556.1_assembly/MjavVW5-NC_026556.1_d_results/MjavVW5-NC_026556.1_out.wig.gz
diff --git a/meloidogyne_assemblies/MfloSJ1_gapClosed.fa.gz b/meloidogyne_assemblies/MfloSJ1_gapClosed.fa.gz