Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added comorbidities field in donor_organism. Fix#1569 #1570

Merged
merged 6 commits into from
Oct 22, 2024
Merged
Show file tree
Hide file tree
Changes from 4 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions docs/jsonBrowser/type.md
Original file line number Diff line number Diff line change
Expand Up @@ -431,6 +431,7 @@ organism_age | Age of organism in Age units measured since birth. | string | no
organism_age_unit | The unit in which Age is expressed. | object | no | [See module time_unit_ontology](module.md#time-unit-ontology) | Age unit | |
development_stage | A classification of the developmental stage of the organism. | object | yes | [See module development_stage_ontology](module.md#development-stage-ontology) | Development stage | |
diseases | Short description of known disease(s) of the organism. | array | no | [See module disease_ontology](module.md#disease-ontology) | Known disease(s) | |
comorbidities | Short description of comorbidity(-ies) or secondary disease(s) of the organism. | array | no | [See module disease_ontology](module.md#disease-ontology) | Comorbidities | |
death | Information about conditions of death of the organism. | object | no | [See module death](module.md#death) | Death conditions | |
familial_relationships | Information about other organisms related to this organism. | array | no | [See module familial_relationship](module.md#familial-relationship) | Familial relationship | |
medical_tests | Information about the medical tests of the organism. | object | no | [See module medical_tests](module.md#medical-tests) | Medical tests | |
Expand Down
9 changes: 9 additions & 0 deletions json_schema/type/biomaterial/donor_organism.json
Original file line number Diff line number Diff line change
Expand Up @@ -117,6 +117,15 @@
"user_friendly": "Known disease(s)",
"guidelines": "Enter 'normal' if no known disease."
},
"comorbidities": {
"description": "Short description of comorbidity(-ies) or secondary disease(s) of the organism.",
"type": "array",
"items": {
"$ref": "module/ontology/disease_ontology.json"
},
"user_friendly": "Comorbidities",
"guidelines": "Primary disease should be described in Known diseases field. Leave empty if no comorbidities are known."
},
"death": {
"description": "Information about conditions of death of the organism.",
"type": "object",
Expand Down
1 change: 1 addition & 0 deletions json_schema/update_log.csv
Original file line number Diff line number Diff line change
@@ -1 +1,2 @@
Schema,Change type,Change message,Version,Date
type/biomaterial/donor_organism,minor,Added comorbidities field in the donor_organism Fix#1569,,
Loading