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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,15 +1,14 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <databaseChangeLog | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
|
|
||
| <include file="liquibase/2.0.x.x/convert_id_types.xml" /> | ||
| <include | ||
| file="liquibase/2.0.x.x/validation_site_information.xml" /> | ||
| <include file="liquibase/2.0.x.x/fhir_data_export.xml" /> | ||
| <include file="liquibase/2.0.x.x/default_test.xml" /> | ||
| <include file="liquibase/2.0.x.x/patient_contact.xml" /> | ||
| <include file="liquibase/2.0.x.x/convert_id_types.xml"/> | ||
| <include file="liquibase/2.0.x.x/validation_site_information.xml"/> | ||
| <include file="liquibase/2.0.x.x/fhir_data_export.xml"/> | ||
| <include file="liquibase/2.0.x.x/default_test.xml"/> | ||
| <include file="liquibase/2.0.x.x/patient_contact.xml"/> | ||
|
|
||
| </databaseChangeLog> |
86 changes: 43 additions & 43 deletions
86
src/main/resources/liquibase/2.0.x.x/convert_id_types.xml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,47 +1,47 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <databaseChangeLog | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
|
|
||
| <changeSet author="caleb" id="1"> | ||
| <comment>modify login_user as an example</comment> | ||
|
|
||
| <modifyDataType columnName="id" newDataType="INTEGER" | ||
| schemaName="clinlims" tableName="login_user" /> | ||
| <dropPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" /> | ||
| <addPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" columnNames="id" /> | ||
| <addColumn schemaName="clinlims" tableName="login_user"> | ||
| <column name="last_updated" type="TIMESTAMP WITH TIME ZONE" /> | ||
| </addColumn> | ||
|
|
||
| <rollback> | ||
| <modifyDataType columnName="id" newDataType="numeric" | ||
| schemaName="clinlims" tableName="login_user" /> | ||
| <dropPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" /> | ||
| <addPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" columnNames="login_name" /> | ||
| </rollback> | ||
| </changeSet> | ||
|
|
||
| <changeSet author="caleb" id="2"> | ||
| <comment>modify gender as a second example</comment> | ||
|
|
||
| <modifyDataType columnName="id" newDataType="INTEGER" | ||
| schemaName="clinlims" tableName="gender" /> | ||
| <renameColumn oldColumnName="lastupdated" | ||
| newColumnName="last_updated" columnName="id" schemaName="clinlims" | ||
| tableName="gender"></renameColumn> | ||
|
|
||
| <rollback> | ||
| <modifyDataType columnName="id" newDataType="numeric" | ||
| schemaName="clinlims" tableName="gender" /> | ||
| </rollback> | ||
|
|
||
| </changeSet> | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
|
|
||
| <changeSet author="caleb" id="1"> | ||
| <comment>modify login_user as an example</comment> | ||
|
|
||
| <modifyDataType columnName="id" newDataType="INTEGER" | ||
| schemaName="clinlims" tableName="login_user" /> | ||
| <dropPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" /> | ||
| <addPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" columnNames="id" /> | ||
| <addColumn schemaName="clinlims" tableName="login_user"> | ||
| <column name="last_updated" type="TIMESTAMP WITH TIME ZONE" /> | ||
| </addColumn> | ||
|
|
||
| <rollback> | ||
| <modifyDataType columnName="id" newDataType="numeric" | ||
| schemaName="clinlims" tableName="login_user" /> | ||
| <dropPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" /> | ||
| <addPrimaryKey schemaName="clinlims" | ||
| tableName="login_user" columnNames="login_name" /> | ||
| </rollback> | ||
| </changeSet> | ||
|
|
||
| <changeSet author="caleb" id="2"> | ||
| <comment>modify gender as a second example</comment> | ||
|
|
||
| <modifyDataType columnName="id" newDataType="INTEGER" | ||
| schemaName="clinlims" tableName="gender" /> | ||
| <renameColumn oldColumnName="lastupdated" | ||
| newColumnName="last_updated" columnName="id" schemaName="clinlims" | ||
| tableName="gender"></renameColumn> | ||
|
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||
| <rollback> | ||
| <modifyDataType columnName="id" newDataType="numeric" | ||
| schemaName="clinlims" tableName="gender" /> | ||
| </rollback> | ||
|
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||
| </changeSet> | ||
|
|
||
| </databaseChangeLog> |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,18 +1,19 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <databaseChangeLog | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
|
|
||
| <changeSet author="caleb" id="1"> | ||
| <comment>add lastupdated to site informations without to stop a bug</comment> | ||
| <changeSet author="caleb" id="1"> | ||
| <comment>add lastupdated to site informations without to stop a bug</comment> | ||
|
|
||
| <!-- auto-rollsback --> | ||
| <addColumn schemaName="clinlims" tableName="test"> | ||
| <column name="default_test_result_id" type="numeric(10)" /> | ||
| </addColumn> | ||
| <!-- auto-rollsback --> | ||
| <addColumn schemaName="clinlims" | ||
| tableName="test"> | ||
| <column name="default_test_result_id" type="numeric(10)"/> | ||
| </addColumn> | ||
|
|
||
| </changeSet> | ||
| </changeSet> | ||
|
|
||
| </databaseChangeLog> |
110 changes: 55 additions & 55 deletions
110
src/main/resources/liquibase/2.0.x.x/fhir_data_export.xml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,65 +1,65 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <databaseChangeLog | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
|
|
||
| <changeSet author="caleb" id="1"> | ||
| <comment>add functionality for fhir data export</comment> | ||
| <changeSet author="caleb" id="1"> | ||
| <comment>add functionality for fhir data export</comment> | ||
|
|
||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_task"> | ||
| <column name="id" type="BIGINT"> | ||
| <constraints primaryKey="true" /> | ||
| </column> | ||
| <column name="data_request_attempt_timeout" type="integer" /> | ||
| <column name="max_data_export_interval" type="integer" /> | ||
| <column name="endpoint" type="VARCHAR (255)"> | ||
| <constraints unique="true" /> | ||
| </column> | ||
| </createTable> | ||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_task"> | ||
| <column name="id" type="BIGINT"> | ||
| <constraints primaryKey="true" /> | ||
| </column> | ||
| <column name="data_request_attempt_timeout" type="integer" /> | ||
| <column name="max_data_export_interval" type="integer" /> | ||
| <column name="endpoint" type="VARCHAR (255)" > | ||
| <constraints unique="true" /> | ||
| </column> | ||
| </createTable> | ||
|
|
||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_fhir_resources"> | ||
| <column name="data_export_task_id" type="BIGINT"> | ||
| <constraints | ||
| foreignKeyName="fk_data_export_fhir_resources_data_export_task" | ||
| references="data_export_task(id)"></constraints> | ||
| </column> | ||
| <column name="fhir_resources" type="VARCHAR (255)" /> | ||
| </createTable> | ||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_fhir_resources"> | ||
| <column name="data_export_task_id" type="BIGINT"> | ||
| <constraints | ||
| foreignKeyName="fk_data_export_fhir_resources_data_export_task" | ||
| references="data_export_task(id)"></constraints> | ||
| </column> | ||
| <column name="fhir_resources" type="VARCHAR (255)" /> | ||
| </createTable> | ||
|
|
||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_headers"> | ||
| <column name="data_export_task_id" type="BIGINT"> | ||
| <constraints | ||
| foreignKeyName="fk_data_export_headers_data_export_task" | ||
| references="data_export_task(id)"></constraints> | ||
| </column> | ||
| <column name="key" type="VARCHAR (255)" /> | ||
| <column name="value" type="VARCHAR (255)" /> | ||
| </createTable> | ||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_headers"> | ||
| <column name="data_export_task_id" type="BIGINT"> | ||
| <constraints | ||
| foreignKeyName="fk_data_export_headers_data_export_task" | ||
| references="data_export_task(id)"></constraints> | ||
| </column> | ||
| <column name="key" type="VARCHAR (255)" /> | ||
| <column name="value" type="VARCHAR (255)" /> | ||
| </createTable> | ||
|
|
||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_attempt"> | ||
| <column name="id" type="BIGINT"> | ||
| <constraints primaryKey="true" /> | ||
| </column> | ||
| <column name="start_time" type="DATETIME" /> | ||
| <column name="end_time" type="DATETIME" /> | ||
| <column name="data_export_task_id" type="BIGINT"> | ||
| <constraints | ||
| foreignKeyName="fk_data_export_attempt_data_export_task" | ||
| references="data_export_task(id)"></constraints> | ||
| </column> | ||
| <column name="data_export_status" type="VARCHAR (255)" /> | ||
| </createTable> | ||
| <!-- auto-rollsback --> | ||
| <createTable schemaName="clinlims" | ||
| tableName="data_export_attempt"> | ||
| <column name="id" type="BIGINT"> | ||
| <constraints primaryKey="true" /> | ||
| </column> | ||
| <column name="start_time" type="DATETIME" /> | ||
| <column name="end_time" type="DATETIME" /> | ||
| <column name="data_export_task_id" type="BIGINT"> | ||
| <constraints | ||
| foreignKeyName="fk_data_export_attempt_data_export_task" | ||
| references="data_export_task(id)"></constraints> | ||
| </column> | ||
| <column name="data_export_status" type="VARCHAR (255)" /> | ||
| </createTable> | ||
|
|
||
| </changeSet> | ||
| </changeSet> | ||
|
|
||
| </databaseChangeLog> |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,49 +1,44 @@ | ||
| <?xml version="1.0" encoding="utf-8"?> | ||
| <databaseChangeLog | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
|
|
||
|
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||
| <changeSet author="csteele" id="1"> | ||
| <preConditions onFail="MARK_RAN"> | ||
| <changeSet author="csteele" id="1"> | ||
| <preConditions onFail="MARK_RAN"> | ||
| <sqlCheck expectedResult="0">SELECT count(*) FROM clinlims.reference_tables WHERE name = 'PATIENT_CONTACT'</sqlCheck> | ||
| </preConditions> | ||
| <insert schemaName="clinlims" tableName="reference_tables"> | ||
| <column name="id" valueSequenceNext="reference_tables_seq" /> | ||
| <column name="name" value="PATIENT_CONTACT" /> | ||
| <column name="keep_history" value="Y" /> | ||
| <column name="is_hl7_encoded" value="N" /> | ||
| </insert> | ||
| <rollback> | ||
| <delete schemaName="clinlims" tableName="reference_tables"> | ||
| <where>name='PATIENT_CONTACT'</where> | ||
| </delete> | ||
| </rollback> | ||
| </changeSet> | ||
|
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||
| <sqlCheck expectedResult="0">SELECT count(*) FROM | ||
| clinlims.reference_tables WHERE name = 'PATIENT_CONTACT'</sqlCheck> | ||
|
|
||
| </preConditions> | ||
| <insert schemaName="clinlims" tableName="reference_tables"> | ||
| <column name="id" valueSequenceNext="reference_tables_seq" /> | ||
| <column name="name" value="PATIENT_CONTACT" /> | ||
| <column name="keep_history" value="Y" /> | ||
| <column name="is_hl7_encoded" value="N" /> | ||
| </insert> | ||
| <rollback> | ||
| <delete schemaName="clinlims" tableName="reference_tables"> | ||
| <where>name='PATIENT_CONTACT'</where> | ||
| </delete> | ||
| </rollback> | ||
| </changeSet> | ||
|
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||
| <changeSet author="csteele" id="2"> | ||
| <preConditions onFail="MARK_RAN"> | ||
| <not> | ||
| <tableExists tableName="patient_contact" | ||
| schemaName="clinlims" /> | ||
| </not> | ||
| </preConditions> | ||
| <comment>create patient contact table</comment> | ||
| <createTable schemaName="clinlims" | ||
| tableName="patient_contact"> | ||
| <column name="id" type="NUMERIC(10)"> | ||
| <constraints primaryKey="true" /> | ||
| </column> | ||
| <column name="patient_id" type="NUMERIC(10)" /> | ||
| <column name="person_id" type="NUMERIC(60)" /> | ||
| <column name="lastupdated" type="DATE" /> | ||
| </createTable> | ||
| <createSequence incrementBy="1" schemaName="clinlims" | ||
| sequenceName="patient_contact_seq" startValue="1" /> | ||
| </changeSet> | ||
| <changeSet author="csteele" id="2"> | ||
| <preConditions onFail="MARK_RAN"> | ||
| <not> | ||
| <tableExists tableName="patient_contact" schemaName="clinlims" /> | ||
| </not> | ||
| </preConditions> | ||
| <comment>create patient contact table</comment> | ||
| <createTable schemaName="clinlims" tableName="patient_contact"> | ||
| <column name="id" type="NUMERIC(10)"> | ||
| <constraints primaryKey="true" /> | ||
| </column> | ||
| <column name="patient_id" type="NUMERIC(10)" /> | ||
| <column name="person_id" type="NUMERIC(60)" /> | ||
| <column name="lastupdated" type="DATE" /> | ||
| </createTable> | ||
| <createSequence incrementBy="1" schemaName="clinlims" | ||
| sequenceName="patient_contact_seq" startValue="1" /> | ||
| </changeSet> | ||
| </databaseChangeLog> |
22 changes: 11 additions & 11 deletions
22
src/main/resources/liquibase/2.0.x.x/validation_site_information.xml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,18 +1,18 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <databaseChangeLog | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
| xmlns="http://www.liquibase.org/xml/ns/dbchangelog" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| xsi:schemaLocation="http://www.liquibase.org/xml/ns/dbchangelog | ||
| http://www.liquibase.org/xml/ns/dbchangelog/dbchangelog-3.8.xsd"> | ||
|
|
||
| <changeSet author="caleb" id="1"> | ||
| <comment>add lastupdated to site informations without to stop a bug</comment> | ||
| <changeSet author="caleb" id="1"> | ||
| <comment>add lastupdated to site informations without to stop a bug</comment> | ||
|
|
||
| <!-- auto-rollsback --> | ||
| <addNotNullConstraint schemaName="clinlims" | ||
| tableName="site_information" columnName="lastupdated" | ||
| columnDataType="DATE" defaultNullValue="${now}" /> | ||
| <!-- auto-rollsback --> | ||
| <addNotNullConstraint schemaName="clinlims" | ||
| tableName="site_information" columnName="lastupdated" | ||
| columnDataType="DATE" defaultNullValue="${now}" /> | ||
|
|
||
| </changeSet> | ||
| </changeSet> | ||
|
|
||
| </databaseChangeLog> |
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