#155 report dump

reports/seeds-physical/seed-eas.Rmd

@@ -0,0 +1,76 @@
+---
+title: 'EAS : Seed report'
+output:
+  word_document:
+    keep_md: yes
+    reference_docx: rmd-style.docx
+    toc: yes
+  html_document:
+    css: ~/GitHub/IALSA-2015-Portland/libs/css/sidebar-simple.css
+    keep_md: yes
+    toc: yes
+date: 'Date: `r Sys.Date()`'
+---
+<!-- For instructions, see http://rmarkdown.rstudio.com/word_document_format.html and http://rmarkdown.rstudio.com/articles_docx.html -->
+
+This report contains a searchable table, followed by publication-ready tables.
+
+<!--  Set the working directory to the repository's base directory; this assumes the report is nested inside of two directories.-->
+```{r, echo=F, message=F} 
+# cat("Working directory: ", getwd())
+library(knitr)
+opts_knit$set(root.dir='../../')  #Don't combine this call with any other chunk -especially one that uses file paths.
+```
+
+<!-- Set the report-wide options, and point to the external code file. -->
+```{r set_options, echo=F}
+# cat("Working directory: ", getwd())
+opts_chunk$set(
+  results    = 'show', 
+  comment    = NA, 
+  tidy       = FALSE,
+  fig.width  = 4, 
+  fig.height = 4, 
+  fig.path   = 'figure-png/'
+)
+# dpi = 400,
+# out.width = "650px", #This affects only the markdown, not the underlying png file.  The height will be scaled appropriately.
+
+echoChunks <- FALSE
+options(width=120) #So the output is 50% wider than the default.
+read_chunk("./reports/seeds-physical/seed-study.R") #This allows knitr to call chunks tagged in the underlying *.R file.
+```
+
+<!-- Load the sources.  Suppress the output when loading sources. --> 
+```{r load-sources, echo=echoChunks, message=FALSE}
+```
+
+<!-- Load 'sourced' R files.  Suppress the output when loading packages. --> 
+```{r load-packages, echo=echoChunks, message=FALSE}
+```
+
+<!-- Load any global functions and variables declared in the R file.  Suppress the output. --> 
+```{r declare-globals, echo=echoChunks, results='show', message=FALSE}
+```
+
+<!-- Declare any global functions specific to a Rmd output.  Suppress the output. --> 
+```{r, echo=echoChunks, message=FALSE}
+#Put presentation-specific code in here.  It doesn't call a chunk in the codebehind file.
+```
+
+<!-- Load the datasets.   -->
+```{r load-data, echo=echoChunks, results='show', message=FALSE}
+```
+
+<!-- Tweak the datasets.   -->
+```{r tweak-data, echo=echoChunks, results='show', message=FALSE}
+```
+
+```{r print-functions, echo =echoChunks }
+```
+
+```{r eas, echo=echoChunks, results='asis', message=FALSE}
+```
+
+```{r session-info,echo=echoChunks, results='show'}
+```