Merge branch 'main' of github.com:IDSIA/bayesRecon

.github/workflows/test-coverage.yaml

@@ -0,0 +1,61 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage.yaml
+
+permissions: read-all
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr, any::xml2
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          cov <- covr::package_coverage(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          covr::to_cobertura(cov)
+        shell: Rscript {0}
+
+      - uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

README.Rmd

@@ -24,6 +24,7 @@ knitr::opts_chunk$set(
 [![](http://cranlogs.r-pkg.org/badges/grand-total/bayesRecon)](https://cran.r-project.org/package=bayesRecon)
 [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
 [![License: LGPL (>= 3)](https://img.shields.io/badge/license-LGPL (>= 3)-yellow.svg)](https://www.gnu.org/licences/lgpl-3.0)
+[![Codecov test coverage](https://codecov.io/gh/IDSIA/bayesRecon/graph/badge.svg)](https://app.codecov.io/gh/IDSIA/bayesRecon)
 <!-- badges: end -->
 
 The package `bayesRecon` implements several methods for probabilistic reconciliation of hierarchical time series forecasts.

README.md

@@ -16,6 +16,8 @@ status](https://www.r-pkg.org/badges/version/bayesRecon)](https://CRAN.R-project
 experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
 [![License: LGPL (\>=
 3)](https://img.shields.io/badge/license-LGPL%20(%3E=%203)-yellow.svg)](https://www.gnu.org/licences/lgpl-3.0)
+[![Codecov test
+coverage](https://codecov.io/gh/IDSIA/bayesRecon/graph/badge.svg)](https://app.codecov.io/gh/IDSIA/bayesRecon)
 <!-- badges: end -->
 
 The package `bayesRecon` implements several methods for probabilistic