Include annotations on external terms #14
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Builds off #13 since I had moved all imported terms to the
external.tsv
file there. If we want to get this in before merging that PR, though, I can implement the same changes into the current version.Resolves #12
Uses
rdftab
andontodev-gizmos
to extract annotations on all external terms. Right now, this file is stored assrc/ontology/annotations.owl
but perhaps we just want this in the build directory and not in version control? What do you think @jamesaoverton ? Either way, it gets merged intogecko.owl
.I'm unable to parse CMO and OGMS right now, but I've opened issues in their trackers to try and get this resolved (rat-genome-database/CMO-Clinical-Measurement-Ontology#5 and OGMS/ogms#144).