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Include annotations on external terms #14

Merged
merged 10 commits into from
Sep 14, 2020
Merged

Include annotations on external terms #14

merged 10 commits into from
Sep 14, 2020

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beckyjackson
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Builds off #13 since I had moved all imported terms to the external.tsv file there. If we want to get this in before merging that PR, though, I can implement the same changes into the current version.

Resolves #12

Uses rdftab and ontodev-gizmos to extract annotations on all external terms. Right now, this file is stored as src/ontology/annotations.owl but perhaps we just want this in the build directory and not in version control? What do you think @jamesaoverton ? Either way, it gets merged into gecko.owl.

I'm unable to parse CMO and OGMS right now, but I've opened issues in their trackers to try and get this resolved (rat-genome-database/CMO-Clinical-Measurement-Ontology#5 and OGMS/ogms#144).

@jamesaoverton jamesaoverton merged commit 259a5a6 into master Sep 14, 2020
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Import annotations on external terms
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