Release preparation

.readthedocs.yaml

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+# LICENSE HEADER MANAGED BY add-license-header
+#
+# SPDX-FileCopyrightText: Copyright 2024 German Cancer Research Center (DKFZ) and contributors.
+# SPDX-License-Identifier: MIT
+#
+
+version: 2
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.10"
+
+# build documentation in the docs/ directory with sphinx
+sphinx:
+   configuration: docs/source/conf.py
+   builder: html
+   fail_on_warning: false
+
+# dependencies required to build docs
+python:
+  install:
+    - method: pip
+      path: .
+      extra_requirements:
+        - docs

.gitattributes

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+* text=auto

.gitignore

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+# local settings e.g. regarding paths, also contains tokens
+src/mml/mml.env
+# any potential virtual environment
+venv/
+# intelliJ data
+.idea/*
+# dev install files
+src/mml_core.egg-info/
+plugins/*/src/*.egg-info
+# cache files
+/**/__pycache__/
+/**/.pytest_cache/
+/**/.mypy_cache/
+/**/.coverage
+# space to summarize your experiments
+/notebooks/
+# report files
+/unit_test_report.xml
+/coverage_report.xml
+# locally generated tox files
+/.tox/
+# locally generated documentation
+/docs/build/
+# pytest benchmark files
+.benchmarks
+# potential test builds
+/build/
+#Visual Studio Code configuration Files
+.vscode