Build and test

Bug in calculating `all_by_all_pairwise_similarity` #2165

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Run time

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Job	Run time
test (ubuntu-latest, 3.9)	37m 1s
test (ubuntu-latest, 3.10)	39m 47s
lint (3.9)	10s
lint (3.10)	9s
test (ubuntu-latest, 3.11)	37m 2s
lint (3.12)	13s
test (windows-latest, 3.10)	42m 57s
test (windows-latest, 3.11)	42m 17s
	3h 19m 36s