Build and test

Bug in calculating `all_by_all_pairwise_similarity` #2167

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Run time

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Job	Run time
lint (3.9)	15s
test (ubuntu-latest, 3.9)	37m 36s
lint (3.10)	9s
test (ubuntu-latest, 3.10)	39m 55s
test (ubuntu-latest, 3.11)	37m 34s
lint (3.12)	10s
test (windows-latest, 3.10)	40m 27s
test (windows-latest, 3.11)	43m 27s
	3h 19m 33s