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| <title>oaklib.converters.data_model_converter — oaklib documentation</title> | ||
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| <h1>Source code for oaklib.converters.data_model_converter</h1><div class="highlight"><pre> | ||
| <span></span><span class="kn">from</span> <span class="nn">abc</span> <span class="kn">import</span> <span class="n">ABC</span><span class="p">,</span> <span class="n">abstractmethod</span> | ||
| <span class="kn">from</span> <span class="nn">dataclasses</span> <span class="kn">import</span> <span class="n">dataclass</span> | ||
| <span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Callable</span><span class="p">,</span> <span class="n">Optional</span> | ||
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| <span class="kn">import</span> <span class="nn">curies</span> | ||
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| <span class="kn">from</span> <span class="nn">oaklib.datamodels.ontology_metadata</span> <span class="kn">import</span> <span class="n">Any</span> | ||
| <span class="kn">from</span> <span class="nn">oaklib.types</span> <span class="kn">import</span> <span class="n">CURIE</span> | ||
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| <div class="viewcode-block" id="DataModelConverter"> | ||
| <a class="viewcode-back" href="../../../packages/converters/data-model-converter.html#oaklib.converters.data_model_converter.DataModelConverter">[docs]</a> | ||
| <span class="nd">@dataclass</span><span class="p">(</span><span class="n">eq</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span> | ||
| <span class="k">class</span> <span class="nc">DataModelConverter</span><span class="p">(</span><span class="n">ABC</span><span class="p">):</span> | ||
| <span class="w"> </span><span class="sd">"""</span> | ||
| <span class="sd"> Base class for all inter-data model converters.</span> | ||
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| <span class="sd"> Do not use this directly: use one of the subclasses.</span> | ||
| <span class="sd"> """</span> | ||
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| <span class="n">curie_converter</span><span class="p">:</span> <span class="n">curies</span><span class="o">.</span><span class="n">Converter</span> <span class="o">=</span> <span class="kc">None</span> | ||
| <span class="w"> </span><span class="sd">"""Converts between CURIEs and URIs"""</span> | ||
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| <span class="n">labeler</span><span class="p">:</span> <span class="n">Callable</span><span class="p">[[</span><span class="n">CURIE</span><span class="p">],</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">str</span><span class="p">]]</span> <span class="o">=</span> <span class="kc">None</span> | ||
| <span class="w"> </span><span class="sd">"""A function that returns a label for a given CURIE"""</span> | ||
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| <span class="n">enforce_canonical_ordering</span><span class="p">:</span> <span class="n">Optional</span><span class="p">[</span><span class="nb">bool</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span> | ||
| <span class="w"> </span><span class="sd">"""If True, will enforce canonical ordering of keys in the output"""</span> | ||
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| <span class="k">def</span> <span class="fm">__hash__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> | ||
| <span class="k">return</span> <span class="nb">hash</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="p">))</span> | ||
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| <div class="viewcode-block" id="DataModelConverter.convert"> | ||
| <a class="viewcode-back" href="../../../packages/converters/data-model-converter.html#oaklib.converters.data_model_converter.DataModelConverter.convert">[docs]</a> | ||
| <span class="nd">@abstractmethod</span> | ||
| <span class="k">def</span> <span class="nf">convert</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">source</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span> <span class="n">target</span><span class="p">:</span> <span class="n">Any</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span> <span class="o">-></span> <span class="n">Any</span><span class="p">:</span> | ||
| <span class="w"> </span><span class="sd">"""</span> | ||
| <span class="sd"> Converts from a source object to a target object.</span> | ||
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| <span class="sd"> Individual subclasses will map this to a specific subtype.</span> | ||
|
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| <span class="sd"> :param source:</span> | ||
| <span class="sd"> :param target: Optional. If passed, modified in place</span> | ||
| <span class="sd"> :param kwargs: Additional arguments</span> | ||
| <span class="sd"> :return:</span> | ||
| <span class="sd"> """</span> | ||
| <span class="k">raise</span> <span class="ne">NotImplementedError</span></div> | ||
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| <div class="viewcode-block" id="DataModelConverter.dump"> | ||
| <a class="viewcode-back" href="../../../packages/converters/data-model-converter.html#oaklib.converters.data_model_converter.DataModelConverter.dump">[docs]</a> | ||
| <span class="nd">@abstractmethod</span> | ||
| <span class="k">def</span> <span class="nf">dump</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">source</span><span class="p">:</span> <span class="n">Any</span><span class="p">,</span> <span class="n">target</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span> <span class="o">-></span> <span class="kc">None</span><span class="p">:</span> | ||
| <span class="w"> </span><span class="sd">"""</span> | ||
| <span class="sd"> Dumps a source object to a target file.</span> | ||
|
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||
| <span class="sd"> :param source:</span> | ||
| <span class="sd"> :param target:</span> | ||
| <span class="sd"> :return:</span> | ||
| <span class="sd"> """</span> | ||
| <span class="k">raise</span> <span class="ne">NotImplementedError</span></div> | ||
| </div> | ||
|
|
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