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d3viz writer #700

Merged
merged 4 commits into from
Mar 8, 2024
Merged

d3viz writer #700

merged 4 commits into from
Mar 8, 2024

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cmungall
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  • Adding d3viz json tree export
  • Adding ability to output d3viz json.

Also added graph transformers to allow for dynamic generation of
SEP-style grouping classes.

Fixes #696
@codecov-commenter
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codecov-commenter commented Jan 27, 2024

Codecov Report

Attention: Patch coverage is 85.47945% with 53 lines in your changes are missing coverage. Please review.

Project coverage is 76.34%. Comparing base (15bf85c) to head (3ba8d61).

Files Patch % Lines
src/oaklib/cli.py 67.85% 18 Missing ⚠️
src/oaklib/transformers/sep_transformer.py 89.24% 10 Missing ⚠️
src/oaklib/transformers/graph_transformer.py 60.00% 8 Missing ⚠️
src/oaklib/transformers/edge_filter_transformer.py 85.36% 6 Missing ⚠️
src/oaklib/transformers/transformers_factory.py 87.87% 4 Missing ⚠️
src/oaklib/utilities/obograph_utils.py 94.44% 4 Missing ⚠️
...oaklib/implementations/sqldb/sql_implementation.py 80.00% 1 Missing ⚠️
src/oaklib/transformers/ontology_transformer.py 85.71% 1 Missing ⚠️
tests/test_cli.py 96.42% 1 Missing ⚠️

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Additional details and impacted files
@@            Coverage Diff             @@
##             main     #700      +/-   ##
==========================================
+ Coverage   76.22%   76.34%   +0.11%     
==========================================
  Files         256      261       +5     
  Lines       29801    30132     +331     
==========================================
+ Hits        22717    23004     +287     
- Misses       7084     7128      +44     

☔ View full report in Codecov by Sentry.
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@cmungall cmungall merged commit e4d6e63 into main Mar 8, 2024
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2 participants