part of #2 (Questionnaire fully dynamic and configurable)

IPK-BIT · Mar 4, 2024 · 53b7bcf · 53b7bcf
1 parent 0aa8d60
commit 53b7bcf
Show file tree

Hide file tree

Showing 7 changed files with 234 additions and 296 deletions.
diff --git a/config/breedfides/wizard.steps.config.js b/config/breedfides/wizard.steps.config.js
@@ -6,26 +6,23 @@ window.steps = [
                 label: 'Project Title',
                 type: 'text',
                 isaMapping: {
-                    entity: 'investigation',
-                    attribute: 'title'
+                    jsonPath: 'title'
                 },
                 explanation: 'DM-3'
             },
             {
                 label: 'Project Description',
                 type: 'textarea',
                 isaMapping: {
-                    entity: 'investigation',
-                    attribute: 'description'
+                    jsonPath: 'description'
                 },
                 explanation: 'DM-4'
             },
             {
                 label: 'Institution',
                 type: 'text',
                 isaMapping: {
-                    entity: 'investigation',
-                    attribute: 'comments',
+                    jsonPath: 'comments',
                     commentName: 'Study Contact Institution'
                 },
                 explanation: 'DM-16'
@@ -34,8 +31,7 @@ window.steps = [
                 label: 'Institution Address',
                 type: 'text',
                 isaMapping: {
-                    entity: 'investigation',
-                    attribute: 'comments',
+                    jsonPath: 'comments',
                     commentName: 'Study Contact Institution'
                 },
                 explanation: 'DM-16'
@@ -49,35 +45,35 @@ window.steps = [
                 label: 'Authors',
                 type: 'people',
                 isaMapping: {
-                    entity: 'investigation',
-                    attribute: 'people'
+                    jsonPath: 'people'
                 },
                 explanation: 'DM-16',
                 componentConfig: {
                     showComments: false
                 }
             }
         ],
-        //hook: 'addStudy' // not needed in BreedFides step config, as the study object is created due to prefilling in wizard.config.js
     },
     {
+        hooks: [
+            {
+                type: 'addStudy'
+            }
+        ],
         title: 'Please provide the Title and Location of your Study',
         fields: [
             {
                 label: 'Study title',
                 type: 'text',
                 isaMapping: {
-                    entity: 'study',
-                    attribute: 'title',
-                    studyIndex: 0 // can also be omitted, in this case it is set to 0 by default
+                    jsonPath: 'studies[0].title',
                 }
             },
             {
                 label: 'Location',
                 type: 'text',
                 isaMapping: {
-                    entity: 'study',
-                    attribute: 'comments',
+                    jsonPath: 'studies[0].comments',
                     commentName: 'Study Experimental Site'
                 },
                 explanation: 'DM-18'
@@ -86,8 +82,7 @@ window.steps = [
                 label: 'Location Latitude',
                 type: 'text',
                 isaMapping: {
-                    entity: 'study',
-                    attribute: 'comments',
+                    jsonPath: 'studies[0].comments',
                     commentName: 'Study Latitude'
                 },
                 explanation: 'DM-19'
@@ -96,8 +91,7 @@ window.steps = [
                 label: 'Location Longitude',
                 type: 'text',
                 isaMapping: {
-                    entity: 'study',
-                    attribute: 'comments',
+                    jsonPath: 'studies[0].comments',
                     commentName: 'Study Longitude'
                 },
                 explanation: 'DM-20'
@@ -106,8 +100,7 @@ window.steps = [
                 label: 'Country',
                 type: 'text',
                 isaMapping: {
-                    entity: 'study',
-                    attribute: 'comments',
+                    jsonPath: 'studies[0].comments',
                     commentName: 'Study Country'
                 },
                 explanation: 'DM-17'
@@ -135,31 +128,26 @@ window.steps = [
                     commentName: 'Study Data File Description'
                 }
             }
-        ],
-        hook: 'addProtocol',
-        hookParameters: {
-            protocolName: 'Growth',
-            protocolVersion: 'MIAPPE v1.1',
-            protocolDescription: 'How the plants were grown up.',
-            protocolParameters: ['Light intensity', 'Air temperature']
-        }
+        ]
     },*/
     {
+        hooks: [
+            {
+                type: 'addProtocol',
+                parameters: {
+                    protocolName: 'Growth',
+                    protocolVersion: 'MIAPPE v1.1',
+                    protocolDescription: 'How the plants were grown up.',
+                    protocolParameters: ['Light intensity', 'Air temperature']
+                }
+            }
+        ],
         title: 'Please provide a brief summary of the Growth Conditions.',
-        hook: 'addProtocol',
-        hookParameters: {
-            protocolName: 'Growth',
-            protocolVersion: 'MIAPPE v1.1',
-            protocolDescription: 'How the plants were grown up.',
-            protocolParameters: ['Light intensity', 'Air temperature']
-        },
         fields: [
             {
                 label: 'Growth description',
                 type: 'textarea',
                 isaMapping: {
-                    //entity: 'protocol',
-                    //attribute: 'description',
                     jsonPath: 'studies[0].protocols[0].description'
                 },
                 explanation: 'DM-67'
@@ -168,29 +156,16 @@ window.steps = [
     },
     {
         title: 'Please select constant Parameters for all Samples of the Experiment.',
-        level: 'Study',
         component: 'ProtocolParametersSelect',
         jsonPath: 'studies[0].protocols[0].parameters'
     },
     {
         title: 'Select Factors that are different between the Samples.',
-        level: 'Study',
         component: 'FactorsSelect',
         jsonPath: 'studies[0].factors'
     },
-    /*{
-        title: 'Growth Protocol',
-        level: 'Study',
-        component: 'StudyTemplateGenerator'
-    },
-    {
-        title: 'Materials',
-        level: 'Study',
-        component: 'Materials'
-    }*/
     {
         title: 'Upload template',
-        level: 'Study',
         component: 'Uploader',
         jsonPath: 'studies[0]'
     }