fixed asasy

IPK-BIT · Dec 15, 2023 · 9057085 · 9057085
1 parent 4bb4edf
commit 9057085
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Showing 2 changed files with 19 additions and 11 deletions.
diff --git a/src/components/isa/assay/Assay.svelte b/src/components/isa/assay/Assay.svelte
@@ -29,7 +29,25 @@
             let emptyProcess = Schemas.getObjectFromSchema('process');
             emptyProcess.executesProtocol = protocol;
             protocol.parameters.forEach(parameter => {
-                emptyProcess.parameterValues.push(row[columnNames.indexOf(parameter.parameterName.annotationValue)])
+                // emptyProcess.parameterValues.push(row[columnNames.indexOf(parameter.parameterName.annotationValue)])
+                let emptyParameter = Schemas.getObjectFromSchema('process_parameter_value');
+                // let emptyCategory = Schemas.getObjectFromSchema('protocol_parameter');
+                let emptyOntologyAnnotation = Schemas.getObjectFromSchema('ontology_annotation');
+                emptyOntologyAnnotation.annotationValue="";
+                // emptyOntologyAnnotation.annotationValue = parameter.parameterName.annotationValue;
+                // emptyCategory.parameterName = parameter.parameterName.annotationValue;
+                emptyParameter.category = parameter;
+                emptyParameter.value = row[columnNames.indexOf(parameter.parameterName.annotationValue)];
+                emptyParameter.unit = emptyOntologyAnnotation;
+                // emptyProcess.parameterValues.push(row[columnNames.indexOf(parameter.parameterName.annotationValue)])
+                console.log(emptyParameter);
+                emptyProcess.parameterValues.push(emptyParameter);
+                emptyProcess.inputs = [];
+                emptyProcess.outputs = [];
+                emptyProcess.inputs.push(emptySample);
+                let emptyOutput = Schemas.getObjectFromSchema('sample');
+                emptyOutput.name = row[columnNames.indexOf('Assay Name')];
+                emptyProcess.outputs.push(emptyOutput   );
             });
             assay.processSequence = [...assay.processSequence,emptyProcess];
         });

diff --git a/src/components/isa/generic/materials/Materials.svelte b/src/components/isa/generic/materials/Materials.svelte
@@ -75,16 +75,6 @@
             let emptySource = Schemas.getObjectFromSchema('source');
             emptySource.name = row[columnNames.indexOf('Material Name')];
             emptySource.characteristics = [];
-            // emptySource.characteristics.push({
-            //     Organism: row[columnNames.indexOf('Organism')], 
-            //     Genus: row[columnNames.indexOf('Genus')], 
-            //     Species: row[columnNames.indexOf('Species')],
-            //     Infraspecific_name: row[columnNames.indexOf('Infraspecific Name')],
-            //     Biological_material_latitude: row[columnNames.indexOf('Latitude')],
-            //     Biological_material_longitude: row[columnNames.indexOf('Longitude')],
-            //     Variety_name: row[columnNames.indexOf('Variety Name')],
-            //     Variety_database: row[columnNames.indexOf('Variety Database')],
-            // });
             emptySource.characteristics.push(Schemas.createCharacteristicObject('Organism', row[columnNames.indexOf('Organism')]));
             emptySource.characteristics.push(Schemas.createCharacteristicObject('Genus', row[columnNames.indexOf('Genus')]));
             emptySource.characteristics.push(Schemas.createCharacteristicObject('Species', row[columnNames.indexOf('Species')]));