How to run this stuff

go to common/data_helpers and get the data first

./download_data.sh

will download all the needed examplary data to the examplary_data folder.

For developement purposes, with volumes mounted up simply run

docker compose -f docker-compose.yaml -f docker-compose.agent.yaml -f docker-compose.local.yaml up --build

For deployment purposes run:

docker compose -f docker-compose.yaml up --build

then see localhost:8000/docs to run full process of running agent, reading data from root, sending it to worker by json and then worker sending it to database use /send_agent/ method

if the services did not stand up try calling them in this order

docker compose up web -d
docker compose up agent -d
docker compose up worker -d

or better yet, open each one in separate terminal

docker compose up web
docker compose up agent
docker compose up worker

Demo step by step

1. Download the repo
2. Download the git submodule using
3. Download data. Use common/data_helpers/download_data.sh to download exemplary files to examplary_data_hold folder and copy histo_description.json to examplary_data

git submodule init
git submodule update --remote --recursive

4. Run backend

docker compose -f docker-compose.yaml -f docker-compose.local.yaml up --build

5. Run frontend

cd j-pet-console-fe
docker compose -f docker-compose.yml up --build

6. Run Agent

cd agent
cp examplary_config.yaml config.yaml
docker compose -f docker-compose.yml -f docker-compose.local.yml up --build

6. Open http://localhost:8000/docs and trigger seed
7. Wait untill all of the services are up
8. Copy any .root file from examplary_data_hold to examplary_data - this will trigger root conversion and upload