v0.1.1

What's Changed

• Add pyarrow to pyproject by @cmalinmayor in #142
• ci(dependabot): bump actions/cache from 3 to 4 by @dependabot in #140
• Fix CTC matching for emtpy frames by @bentaculum in #139
• ci(dependabot): bump codecov/codecov-action from 3 to 4 by @dependabot in #143
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #144
• Speed up CTCMatcher by @bentaculum in #148
• Remove support for python 3.8 by @msschwartz21 in #151
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #146
• ci(dependabot): bump softprops/action-gh-release from 1 to 2 by @dependabot in #145
• Add iou matcher option to use linear assignment to get one-to-one matching by @msschwartz21 in #150
• Fix multiple IOU-related bugs by @cmalinmayor in #153
• Check empty subgraph by @cmalinmayor in #141
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #154

Full Changelog: v0.1.0...v0.1.1

v0.1.0

What's Changed

• Improve rendering of cli documentation in cli and in Read The Docs by @msschwartz21 in #29
• Add report of matcher coverage by @msschwartz21 in #34
• Use appropriate label key for gt and pred graphs in ctc matching by @DragaDoncila in #35
• Remove detection matrix computation by @DragaDoncila in #36
• Faster matchings/metrics by @maweigert in #37
• Create Enums for our Node and Edge Attribute strings by @cmalinmayor in #46
• Eliminate use of TrackEvents in in CTC error calculations by @msschwartz21 in #47
• Eliminate use of DivisionEvents and reorganize placement of division functions by @msschwartz21 in #48
• Remove TrackingData by @msschwartz21 in #50
• Graph access funcs by @cmalinmayor in #51
• README update by @cmalinmayor in #55
• Add function to extract tracklets by @msschwartz21 in #56
• Use logging API by @bentaculum in #58
• Add basic set of performance benchmarking tests by @msschwartz21 in #62
• Improve the benchmarking workflow to generate a commit comment on PRs by @msschwartz21 in #64
• Improve benchmark action when running on repo forks by @msschwartz21 in #65
• Annotate intertrack edges in the ctc get_edge_errors function by @msschwartz21 in #54
• Correct benchmarking tests assertion for wrong semantic edges by @msschwartz21 in #66
• Speed up accessing nodes/edges by attribute and node/edge attributes by @cmalinmayor in #63
• Speed up CTC edge errors by @bentaculum in #59
• test: enable codecov by @tlambert03 in #69
• style: update pre-commit by @tlambert03 in #70
• docs: fix docs build, fix all build warnings, enable strict mode by @tlambert03 in #71
• Adding track overlap metrics from laptrack by @yfukai in #112
• Refactor existing Matched into separate Matcher which returns Matched by @msschwartz21 in #103
• Refactor Metrics class to pass data into compute method not constructor by @msschwartz21 in #109
• Add pull request and issue templates by @msschwartz21 in #121
• Create general pr template by @msschwartz21 in #122
• Remove Pr template headers by @msschwartz21 in #123
• Fix subclass docstrings for sphinx autoapi by @msschwartz21 in #124
• fix import loop by @tlambert03 in #125
• Update run_metrics to take instantiated Matchers and Metrics as input by @msschwartz21 in #118
• style: cleanup string type annotations by @tlambert03 in #104
• Add CTC format checks in loader by @bentaculum in #119
• Create a Results class for storing metric output with associated metadata by @msschwartz21 in #126
• Prune tracking graph API by @cmalinmayor in #111
• Change frame_buffer kwarg to max_frame_buffer by @msschwartz21 in #136

New Contributors

• @maweigert made their first contribution in #37
• @cmalinmayor made their first contribution in #46
• @bentaculum made their first contribution in #58
• @dependabot made their first contribution in #52
• @yfukai made their first contribution in #112
• @pre-commit-ci made their first contribution in #113

Full Changelog: v0.0.2...v0.1.0

v0.0.2

What's Changed

• Correct name in documentation files by @msschwartz21 in #16
• Add run-metrics function by @DragaDoncila in #17
• Fix results return and support matcher kwargs by @msschwartz21 in #20
• Fix docstring for CTC loader and add test by @DragaDoncila in #21
• Add metrics_kwargs as explicit arg and fix matcher kwargs bug by @msschwartz21 in #22
• Add an example notebook for benchmarking CTC data by @msschwartz21 in #23
• Modify .py file names to prefix private modules with _ by @msschwartz21 in #24
• Remove unused ipython extension from docs by @msschwartz21 in #27
• Add support for skipped frames at divisions by @adjavon in #25
• Add basic CLI tools by @DragaDoncila in #26

Full Changelog: v0.0.1...v0.0.2

v0.0.1

What's Changed

• use numba instead of cython by @tlambert03 in #3
• Add division evaluation with temporal tolerance by @msschwartz21 in #4
• Fix missing 't' for single nodes in track graph by @adjavon in #5
• Add base classes for new api by @DragaDoncila in #6
• Add label_key to TrackingGraph by @DragaDoncila in #7
• Pull code to get overlapping labels out into its own function by @DragaDoncila in #8
• Use sphinx-autoapi to automate api documentation by @msschwartz21 in #9
• Implement DivisionMetrics and IOUMatched classes by @msschwartz21 in #11
• Add sample tracking solution for Fluo-N2DL-HeLa ST segmentation by @DragaDoncila in #14
• Draft of README content by @msschwartz21 in #12
• Add cell tracking challenge metrics computation by @DragaDoncila in #10
• Rename cell-tracking-metrics to traccuracy by @msschwartz21 in #15

New Contributors

• @tlambert03 made their first contribution in #3
• @msschwartz21 made their first contribution in #4
• @adjavon made their first contribution in #5
• @DragaDoncila made their first contribution in #6

Full Changelog: https://github.com/Janelia-Trackathon-2023/traccuracy/commits/v0.0.1