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Welcome to JianYang Lab!

We are a team of researchers focused on understanding genomic variation and its impact on human health. Our work involves developing advanced statistical methods to analyze genetic and omics data from large cohorts, with the aim of improving the diagnosis, treatment, and prevention of complex diseases.

Our research areas include genomic variation and population health, molecular mechanisms underlying complex traits and diseases, genomic risk prediction, cancer genomics, and the development of bioinformatics tools.

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  1. MeDuSA MeDuSA Public

    MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.

    R 43 3

  2. gsMap gsMap Public

    Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

    Python 183 15

  3. adview adview Public

    Adata Viewer: Head/Less/Shape h5ad file in terminal

    Rust 11

  4. GCTA GCTA Public

    C++ 5 1

  5. SMR-Portal SMR-Portal Public

    Forked from jianyanglab/SMR-Portal

    SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.

    Vue

  6. gsmr2 gsmr2 Public

    The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics to test for a putative causal association between two phenot…

    R 17 1

Repositories

Showing 10 of 16 repositories
  • gsMap Public

    Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

    JianYang-Lab/gsMap’s past year of commit activity
    Python 183 MIT 15 4 0 Updated Oct 8, 2025
  • OSCA Public Forked from jianyanglab/OSCA
    JianYang-Lab/OSCA’s past year of commit activity
    C++ 0 GPL-3.0 1 0 0 Updated Sep 10, 2025
  • PanCell-eQTL Public

    A mutli-tissue, multi-ancestry sc-eQTL atlas

    JianYang-Lab/PanCell-eQTL’s past year of commit activity
    R 2 0 0 0 Updated Aug 29, 2025
  • GCTA Public
    JianYang-Lab/GCTA’s past year of commit activity
    C++ 5 GPL-3.0 1 0 0 Updated Jul 22, 2025
  • SMR Public
    JianYang-Lab/SMR’s past year of commit activity
    C++ 3 GPL-2.0 0 0 0 Updated Jul 9, 2025
  • SlurmSlim Public

    Optimize Slurm Job Scheduling with MCP-Based Memory Estimation

    JianYang-Lab/SlurmSlim’s past year of commit activity
    Python 2 0 0 0 Updated Mar 23, 2025
  • adview Public

    Adata Viewer: Head/Less/Shape h5ad file in terminal

    JianYang-Lab/adview’s past year of commit activity
    Rust 11 MIT 0 0 0 Updated Mar 19, 2025
  • MeDuSA Public

    MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.

    JianYang-Lab/MeDuSA’s past year of commit activity
    R 43 3 0 0 Updated Feb 20, 2025
  • MeDuSAJ Public
    JianYang-Lab/MeDuSAJ’s past year of commit activity
    C++ 3 0 0 0 Updated Jan 14, 2025
  • depthmate Public

    calculate reference and alternate base depth in tumor-normal pair matched bam

    JianYang-Lab/depthmate’s past year of commit activity
    Rust 2 0 0 0 Updated Dec 30, 2024

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