The functional evolution of termite gut microbiota

This repository contains the scripts to run the analysis performed for the manuscript The functional evolution of termite gut microbiota

Arora, Jigyasa and Kinjo, Yukihiro and Šobotník, Jan and Buček, Aleš and Clitheroe, Crystal and Stiblik, Petr and Roisin, Yves and Žifčáková, Lucia and Park, Yung Chul and Kim, Ki Yoon and Sillam-Dussès, David and Hervé, Vincent and Lo, Nathan and Tokuda, Gaku and Brune, Andreas and Bourguignon, Thomas, The Functional Evolution of Termite Gut Microbiota. Available at https://www.biorxiv.org/content/10.1101/2021.12.01.470864v1

The data analysis occurs in the following steps-

1. hpc_rawreads_assembly.md
2. hpc_taxonomy.md
3. hpc_functionalannotation.md 3.1. hpc_tpmcal.md 3.2. combiningallfiles.md
4. hpc_magextraction.md 4.1. mag_annotation tables.md
5. Statistical analysis

The codes are maintained by Jigyasa Arora. For any questions, please open an issue or email at [email protected]

workflow