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Fix bugs on water forces when using adaptive region. Fix bugs in CUDA platform running. Update scripts for 6zfv. #16

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merged 24 commits into from
Sep 25, 2023

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dingye18
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dingye18 and others added 24 commits January 29, 2023 16:59
* Update the c interface with deepmd

* Remove the setting to GPUNode for DeepPot

* Improved the packaging of the plugin

* Remove simtk in import modules

* Small edit on version control in setup.py

* Add ci config yaml

* Fix bug in github actions

* Build up the environment for CI unit test

* Update github actions run on self-hosted runners

* Update image to ghcr.io

* Add docker login to ghcr.io

* Update ci.yml

* Update ci.yml

* Update ci.yml

* Add credentials in image pul

* Update ci

* Update ci

* Update ci

* Test

* Small fixs for github actions running in container

* Update env variable name

* Update env variable name

* Update env variable name

* Minor fix

* Update env variable name

* test

* test

* Update test for CUDA platform

* remove redundant files

* Remove depend in CUDA toolkit include

* Update container image

* Fix bug in load conda environment

* Fix bug in load conda environment

* Debug

* Debug

* Debug

* Debug

* Small updates in image name
* Update the c interface with deepmd

* Remove the setting to GPUNode for DeepPot

* Improved the packaging of the plugin

* Remove simtk in import modules

* Small edit on version control in setup.py

* Add ci config yaml

* Fix bug in github actions

* Build up the environment for CI unit test

* Update github actions run on self-hosted runners

* Update image to ghcr.io

* Add docker login to ghcr.io

* Update ci.yml

* Update ci.yml

* Update ci.yml

* Add credentials in image pul

* Update ci

* Update ci

* Update ci

* Test

* Small fixs for github actions running in container

* Update env variable name

* Update env variable name

* Update env variable name

* Minor fix

* Update env variable name

* test

* test

* Update test for CUDA platform

* remove redundant files

* Remove depend in CUDA toolkit include

* Update container image

* Fix bug in load conda environment

* Fix bug in load conda environment

* Debug

* Debug

* Debug

* Debug

* Small updates in image name

* Configure CI with ci.yml (#1)

* Update the c interface with deepmd

* Remove the setting to GPUNode for DeepPot

* Improved the packaging of the plugin

* Remove simtk in import modules

* Small edit on version control in setup.py

* Add ci config yaml

* Fix bug in github actions

* Build up the environment for CI unit test

* Update github actions run on self-hosted runners

* Update image to ghcr.io

* Add docker login to ghcr.io

* Update ci.yml

* Update ci.yml

* Update ci.yml

* Add credentials in image pul

* Update ci

* Update ci

* Update ci

* Test

* Small fixs for github actions running in container

* Update env variable name

* Update env variable name

* Update env variable name

* Minor fix

* Update env variable name

* test

* test

* Update test for CUDA platform

* remove redundant files

* Remove depend in CUDA toolkit include

* Update container image

* Fix bug in load conda environment

* Fix bug in load conda environment

* Debug

* Debug

* Debug

* Debug

* Small updates in image name

* Update readme

* Utilized pytest in CI.

* Small fix

* Small fix

* Small fix

* Fix bug

* Fix bug in pytest

* Update

* Fix bug in pytest

* Update the test for python interface

* Refactor the user interface of dp plugin.

* Update __init__.py

* Update test_deepmd_nve.py

* Update test_dp_plugin_nve.py

* Add tests for nvt, npt, alchemical simulations

* Fix bug in alchemical simulation.

* Updaste unit test threshold

* Updaste unit test threshold

* Update the simulation templates in tests.

* Add support for DP/MM with dixed DP region

* Avoid unit test

* Refactor dp (#3)

* Refactor DP plugin

* Avoid unit test

* Small fix in python

* Update the unit test for dp.mm with fixed region

* Small update in ci.yml

* Add support for dp mask

* Add support for DP/MM with adaptive DP region.

* Add support of dp mask for reference platform

* Fix bugs in adaptive dp region simulation

* Update file name for pytest

* Refactor dp (#4)

* Refactor DP plugin

* Avoid unit test

* Small fix in python

* Update the unit test for dp.mm with fixed region

* Small update in ci.yml

* Add support for dp mask

* Add support for DP/MM with adaptive DP region.

* Add support of dp mask for reference platform

* Fix bugs in adaptive dp region simulation

* Update file name for pytest

* Update image in ci workflow

* Fix bug in ci workflow

* Fix in ci workflow

* Fix in ci workflow

* Refactor dp (#5)

* Refactor DP plugin

* Avoid unit test

* Small fix in python

* Update the unit test for dp.mm with fixed region

* Small update in ci.yml

* Add support for dp mask

* Add support for DP/MM with adaptive DP region.

* Add support of dp mask for reference platform

* Fix bugs in adaptive dp region simulation

* Update file name for pytest

* Update image in ci workflow

* Fix bug in ci workflow

* Small fix

* Test the support for dp mask

* Add test for dp adaptive with multi regions

* Add test for dp adaptive with multi regions

* Small fix in unit test

* Update deepmd C++ API with C API.
* Configure CI with ci.yml (#1)

* Update the c interface with deepmd

* Remove the setting to GPUNode for DeepPot

* Improved the packaging of the plugin

* Remove simtk in import modules

* Small edit on version control in setup.py

* Add ci config yaml

* Fix bug in github actions

* Build up the environment for CI unit test

* Update github actions run on self-hosted runners

* Update image to ghcr.io

* Add docker login to ghcr.io

* Update ci.yml

* Update ci.yml

* Update ci.yml

* Add credentials in image pul

* Update ci

* Update ci

* Update ci

* Test

* Small fixs for github actions running in container

* Update env variable name

* Update env variable name

* Update env variable name

* Minor fix

* Update env variable name

* test

* test

* Update test for CUDA platform

* remove redundant files

* Remove depend in CUDA toolkit include

* Update container image

* Fix bug in load conda environment

* Fix bug in load conda environment

* Debug

* Debug

* Debug

* Debug

* Small updates in image name

* Refactor plugin for support C API of DeePMD-kit (#6)

* Update the c interface with deepmd

* Remove the setting to GPUNode for DeepPot

* Improved the packaging of the plugin

* Remove simtk in import modules

* Small edit on version control in setup.py

* Add ci config yaml

* Fix bug in github actions

* Build up the environment for CI unit test

* Update github actions run on self-hosted runners

* Update image to ghcr.io

* Add docker login to ghcr.io

* Update ci.yml

* Update ci.yml

* Update ci.yml

* Add credentials in image pul

* Update ci

* Update ci

* Update ci

* Test

* Small fixs for github actions running in container

* Update env variable name

* Update env variable name

* Update env variable name

* Minor fix

* Update env variable name

* test

* test

* Update test for CUDA platform

* remove redundant files

* Remove depend in CUDA toolkit include

* Update container image

* Fix bug in load conda environment

* Fix bug in load conda environment

* Debug

* Debug

* Debug

* Debug

* Small updates in image name

* Configure CI with ci.yml (#1)

* Update the c interface with deepmd

* Remove the setting to GPUNode for DeepPot

* Improved the packaging of the plugin

* Remove simtk in import modules

* Small edit on version control in setup.py

* Add ci config yaml

* Fix bug in github actions

* Build up the environment for CI unit test

* Update github actions run on self-hosted runners

* Update image to ghcr.io

* Add docker login to ghcr.io

* Update ci.yml

* Update ci.yml

* Update ci.yml

* Add credentials in image pul

* Update ci

* Update ci

* Update ci

* Test

* Small fixs for github actions running in container

* Update env variable name

* Update env variable name

* Update env variable name

* Minor fix

* Update env variable name

* test

* test

* Update test for CUDA platform

* remove redundant files

* Remove depend in CUDA toolkit include

* Update container image

* Fix bug in load conda environment

* Fix bug in load conda environment

* Debug

* Debug

* Debug

* Debug

* Small updates in image name

* Update readme

* Utilized pytest in CI.

* Small fix

* Small fix

* Small fix

* Fix bug

* Fix bug in pytest

* Update

* Fix bug in pytest

* Update the test for python interface

* Refactor the user interface of dp plugin.

* Update __init__.py

* Update test_deepmd_nve.py

* Update test_dp_plugin_nve.py

* Add tests for nvt, npt, alchemical simulations

* Fix bug in alchemical simulation.

* Updaste unit test threshold

* Updaste unit test threshold

* Update the simulation templates in tests.

* Add support for DP/MM with dixed DP region

* Avoid unit test

* Refactor dp (#3)

* Refactor DP plugin

* Avoid unit test

* Small fix in python

* Update the unit test for dp.mm with fixed region

* Small update in ci.yml

* Add support for dp mask

* Add support for DP/MM with adaptive DP region.

* Add support of dp mask for reference platform

* Fix bugs in adaptive dp region simulation

* Update file name for pytest

* Refactor dp (#4)

* Refactor DP plugin

* Avoid unit test

* Small fix in python

* Update the unit test for dp.mm with fixed region

* Small update in ci.yml

* Add support for dp mask

* Add support for DP/MM with adaptive DP region.

* Add support of dp mask for reference platform

* Fix bugs in adaptive dp region simulation

* Update file name for pytest

* Update image in ci workflow

* Fix bug in ci workflow

* Fix in ci workflow

* Fix in ci workflow

* Refactor dp (#5)

* Refactor DP plugin

* Avoid unit test

* Small fix in python

* Update the unit test for dp.mm with fixed region

* Small update in ci.yml

* Add support for dp mask

* Add support for DP/MM with adaptive DP region.

* Add support of dp mask for reference platform

* Fix bugs in adaptive dp region simulation

* Update file name for pytest

* Update image in ci workflow

* Fix bug in ci workflow

* Small fix

* Test the support for dp mask

* Add test for dp adaptive with multi regions

* Add test for dp adaptive with multi regions

* Small fix in unit test

* Update deepmd C++ API with C API.

* Move pb to lfs

* Move pb to lfs

* Update the download link to libdeepmd_c package

* update readme

* Add setGPURank function in Deep Potential model

* Update Readme.
@dingye18 dingye18 merged commit 5945816 into JingHuangLab:master Sep 25, 2023
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